BtaEX6109044 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18967234-18995054:-
Coord C1 exon
chr25:18994809-18995054
Coord A exon
chr25:18970032-18970135
Coord C2 exon
chr25:18967234-18967528
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCTATTTATTTGGGTCCAGGAA
3' ss Score
6.64
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATGAAATCAGGGAAGTAGAAGAGGAGGAAAGTGAATTATTTGAAGGCCTGACAAGCCAACAGATCTTCCTCTGGCTACAAGGTCTGTTCCTTTTTGCCTTGGTGTGGACGGTGGCCGGCACCATCAACGCAGACAGCAGAAAGAAATTTGATCTGTTTTTCCGCAACCTGATCATGGGTATGGATAATAACAACCCAAGACCCAAAAGCGTCAAACTCACCAAAAACAACATCTTTCCAGAAAGAG
Seq A exon
GAAGCATCTATGATTTTTATTTCCTCAAGCAAGCTAGTGGACATTGGTACACATGGACAGAGTATATCACCAAAGAGGAGGAACATATCTCCGCAAGTGCAAAG
Seq C2 exon
GTCTCAGAACTCATCATCCCCACCATGGAGACAGCCCGACAGTCCTTCTTCTTGAAAACCTACCTGGACCATGAGATTCCAATGCTGTTCGTAGGACCCACGGGCACAGGCAAATCGGTCATCACCAACAACTTCCTACTTCGCCTTCCCAAAAATACTTATCTGCCCAACTGCATCAATTTCTCTGCCAGAACTTCAGCCAATCAGACGCAGGATATCATCATGTCCAAGCTGGATCGCCGGCGGAAAGGCCTTTTTGGGCCTCCCATAGGGAAGAAAGCAGTGGTATTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'42-44,'42-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(1.5=11.4)
C2:
PF127752=AAA_7=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACAGATCTTCCTCTGGC
R:
CAAGAAGAAGGACTGTCGGGC
Band lengths:
246-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]