GgaEX0004153 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4944652-4946562:-
Coord C1 exon
chr15:4946359-4946562
Coord A exon
chr15:4945563-4945733
Coord C2 exon
chr15:4944652-4944828
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTTGGTTTGTCTCCATTTAGAGT
3' ss Score
8.43
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
AATGAACAGGTCACTGAAGAGTTTCACAATGTATTTGGTTCTGAAATGAAAGCTGTCACAGGTGATCCAAAGTACGTTGATGATCTTCTGAGAAGAGTGGTTGAACTAACTAGTCCAATGGAAGAGCTGGCTTTTGACCCTTTTAGCCTTGAAGGTGCACATGACTGGAAATTAATTATGGAAGAATTTAAAGTGGGAGTTTCA
Seq A exon
AGTATTGAAGAAGATGCCAAAAACTTTATTGATAAATCTTTTAAGACTCTTCGATCAGCAGAAACTGCATTTGACATGCTGTTGAACTTCAAAAACACCCGCTGTCGTGAAACAATTAATAAGCAGCTGATGATGAAGTTCAATGACATATTGGACCAATACTGTAAAGAG
Seq C2 exon
GTTGAATATGTTAAACAAATCTTTGTTCAAAACCTCATGGATCCACCCTTATTCAAGAATCATCCTCCACTGGCTGGAGCAATATACTGGTCCCGATCACTTTTCTATCGCATCAAACACACTATTGTTCGATTTCAGGAAGTAGAGGGGTTGCTTGCTAGTGAACGTGGAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.7=100)
A:
PF083857=DHC_N1=FE(9.8=100)
C2:
PF083857=DHC_N1=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAGCTGGCTTTTGACC
R:
GCAAGCAACCCCTCTACTTCC
Band lengths:
244-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]