HsaEX1011858 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123789927-123796832:+
Coord C1 exon
chr12:123789927-123790121
Coord A exon
chr12:123793942-123794112
Coord C2 exon
chr12:123796656-123796832
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTGATTTTTTTGCAGGTT
3' ss Score
9.63
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTTGGAGGAATTTTATAACATATTTGGTCCAGAACTAAAGGCAGTGACGGGGGACCCCAAGCGCATTGATGATGTCCTATGCAGAGTGGACGGCCTAGTCACCCCCATGGAAAACCTGACCTTTGACCCCTTCAGCATCAAGTCCTCCCAGTTCTGGAAATATGTGATGGATGAATTCAAGATTGAAGTTCTG
Seq A exon
GTTATTGAGAAAGAAGCAAAACATTTTATTGATGAATCTTTTAAGACGCTTCGATCTGCTGAAGCAGCATTTGACATGCTTTTAAAATTTAAGCACATTCGTTCACGGGAGGCTGTTAATCGACAAATGATGATGAAATTTAATGATATTCTTGCACAGTACTGTAAAGAG
Seq C2 exon
ATTGACATCATTAATAAAATCTTTGTCCAGAACCTTGAAAATCCACCACTGTATAAGAATCACCCTCCAGTAGCAGGTGCAATATACTGGGAACGATCTCTGTTCTTTCGGATTAAGCATACCATCCTCCGATTTCAAGAGGTACAAGAGATACTGGACAGTGATCGAGGACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(21.1=100),PF083857=DHC_N1=PU(1.8=6.2)
A:
PF083857=DHC_N1=FE(9.7=100)
C2:
PF083857=DHC_N1=FE(26.2=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACCTTTGACCCCTTCA
R:
TCCTGTCCTCGATCACTGTCC
Band lengths:
256-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains