MmuEX6021096 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124746543-124748567:+
Coord C1 exon
chr5:124746543-124746737
Coord A exon
chr5:124747603-124747773
Coord C2 exon
chr5:124748391-124748567
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCTTTCTTCTGACAGGTT
3' ss Score
12.24
5' ss Seq
GAGGTGACC
5' ss Score
5.57
Exon sequences
Seq C1 exon
GTCTTGGAAGAATTTTACAACATATTTGGCCCAGAGCTCAAGGCTGTGACAGGGGACCCCAAGAGAATCGACGATGTCCTTGGCCGGGTAGACAGCTTGGTGGCTCCTATGGAAAGCCTGAGCTTTGATCCATTCAGCATCAGATCCTCCCCATACTGGAAATACGTGATGGAGGACTTCAAGCTTGAAGTTCTG
Seq A exon
GTTATTGAGAAAGAAGCCAAAAATTTCATTGATGAATCTTTCAAAACACTTCGCTCAGCGGAAGCGGCCTTCGACATGCTGCTAAAATTCAAGCATATCCGCTCCCGGGAAGCCATCAACCGTCAGATGATGATGAAGTTTAATGACATCCTGGCACAGTACTACAAGGAG
Seq C2 exon
ATCGATATCGTTAATAAGATCTTTGTGCAGAACCAGGACAACCCGCCGCTATACAAGAACCACCCTCCCGTGGCGGGCGCGATATGCTGGGAGCGATCCCTGTTCTACAGGATCAAGCACACCATCCTGCGCTTCATGGAGGTGGAGGAACTCCTGGACAGCGAGAGGGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'6-17,'6-13,13-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(21.1=100),PF083857=DHC_N1=PU(4.0=13.8)
A:
PF083857=DHC_N1=FE(9.7=100)
C2:
PF083857=DHC_N1=FE(10.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCCTATGGAAAGCCTGA
R:
GTTCCTCCACCTCCATGAAGC
Band lengths:
246-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types