MmuEX6021096 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125226913-125228937:+
Coord C1 exon
chr5:125226913-125227107
Coord A exon
chr5:125227973-125228143
Coord C2 exon
chr5:125228761-125228937
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCTTTCTTCTGACAGGTT
3' ss Score
12.24
5' ss Seq
GAGGTGACC
5' ss Score
5.57
Exon sequences
Seq C1 exon
GTCTTGGAAGAATTTTACAACATATTTGGCCCAGAGCTCAAGGCTGTGACAGGGGACCCCAAGAGAATCGACGATGTCCTTGGCCGGGTAGACAGCTTGGTGGCTCCTATGGAAAGCCTGAGCTTTGATCCATTCAGCATCAGATCCTCCCCATACTGGAAATACGTGATGGAGGACTTCAAGCTTGAAGTTCTG
Seq A exon
GTTATTGAGAAAGAAGCCAAAAATTTCATTGATGAATCTTTCAAAACACTTCGCTCAGCGGAAGCGGCCTTCGACATGCTGCTAAAATTCAAGCATATCCGCTCCCGGGAAGCCATCAACCGTCAGATGATGATGAAGTTTAATGACATCCTGGCACAGTACTACAAGGAG
Seq C2 exon
ATCGATATCGTTAATAAGATCTTTGTGCAGAACCAGGACAACCCGCCGCTATACAAGAACCACCCTCCCGTGGCGGGCGCGATATGCTGGGAGCGATCCCTGTTCTACAGGATCAAGCACACCATCCTGCGCTTCATGGAGGTGGAGGAACTCCTGGACAGCGAGAGGGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(21.4=100),PF083857=DHC_N1=PU(4.0=13.6)
A:
PF083857=DHC_N1=FE(9.7=100)
C2:
PF083857=DHC_N1=PD(0.1=0.0),PF083857=DHC_N1=FE(26.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCCTATGGAAAGCCTGA
R:
GTTCCTCCACCTCCATGAAGC
Band lengths:
246-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: