GgaEX0004784 @ galGal3
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
NA
Coordinates
chr17:7123982-7126533:-
Coord C1 exon
chr17:7126435-7126533
Coord A exon
chr17:7124296-7124426
Coord C2 exon
chr17:7123982-7124069
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATATTATTAATCTATTTCAGTTC
3' ss Score
8.69
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CCCAGGAGAAGTGGATACAGTGGATGCATTTCAGGGGCGAGAGAAAGATTGCATCATAGTGACATGTGTCCGGGCAAACAGCTCTAAAGGGTCAATTGG
Seq A exon
TTCAAGTCAAAAAGAAGCTTAAAGTCTTGATAGGTGAAGTGAGGTTGATGACTTCTGTACTTTGAAGAACATTTAAGGAAGCAGTAGTTGGCATTAAGAGGGGATTTGCACTAAGAAAGGAAACATCAATG
Seq C2 exon
GTTTCTGGCAAGTCTTCAGCGTTTGAACGTTACAATTACCCGAGCCAGATTCAGCCTCTTCATCCTTGGAAGACTGAAAACACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661-'31-33,'31-32,32-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(16.3=100)
A:
PF130871=AAA_12=PD(2.8=62.5)
C2:
PF130871=AAA_12=PD(12.9=86.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGGATGCATTTCAGGGG
R:
ATGAGTGTTTTCAGTCTTCCAAGGA
Band lengths:
170-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]