GgaEX0004784 @ galGal4
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr17:6492391-6494942:-
Coord C1 exon
chr17:6494844-6494942
Coord A exon
chr17:6492624-6492835
Coord C2 exon
chr17:6492391-6492478
Length
212 bp
Sequences
Splice sites
3' ss Seq
ATATTATTAATCTATTTCAGTTC
3' ss Score
8.69
5' ss Seq
CATGTAAAG
5' ss Score
1
Exon sequences
Seq C1 exon
CCCAGGAGAAGTGGATACAGTGGATGCATTTCAGGGGCGAGAGAAAGATTGCATCATAGTGACATGTGTCCGGGCAAACAGCTCTAAAGGGTCAATTGG
Seq A exon
TTCAAGTCAAAAAGAAGCTTAAAGTCTTGATAGGTGAAGTGAGGTTGATGACTTCTGTACTTTGAAGAACATTTAAGGAAGCAGTAGTTGGCATTAAGAGGGGATTTGCACTAAGAAAGGAAACATCAATGGTAAGAGCTGGAAAGGACTGGAATTCCCTGCAAGGCATCAATGGAGAAAGAAGGAAAAGCAATTCACCTGAAGCCCTTCAT
Seq C2 exon
GTTTCTGGCAAGTCTTCAGCGTTTGAACGTTACAATTACCCGAGCCAGATTCAGCCTCTTCATCCTTGGAAGACTGAAAACACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(16.3=100)
A:
PF130871=AAA_12=PD(2.8=62.5)
C2:
PF130871=AAA_12=PD(12.9=86.7)
Main Inclusion Isoform:
ENSGALT00000005801fB509
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGTGGATGCATTTCAGGGG
R:
CATGAGTGTTTTCAGTCTTCCAAGG
Band lengths:
172-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]