GgaEX0005814 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NVJ2]
Coordinates
chr8:6586732-6588156:+
Coord C1 exon
chr8:6586732-6586828
Coord A exon
chr8:6587678-6587736
Coord C2 exon
chr8:6588091-6588156
Length
59 bp
Sequences
Splice sites
3' ss Seq
TACATGTACTTATCCTGCAGGAA
3' ss Score
9.31
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCCGTGTGCGTGTCCATTACTCCGGGTTAAATTTTGCTGATATCTTGGCCTGCCAGGGGTTGTACCAGGAGAAACATGCTCCTCCGTTCACCCCTG
Seq A exon
GAATGGAGTTTTCAGGGACTGTAATGGAGACAGGAGAGAACGTCAGTGCTGTGAAGGAG
Seq C2 exon
GGGCACAGGGTGATTGGTGTGACTGGCATCAGTGCTATGGCAGAGGAGTGCGTTGTCGATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341-'4-6,'4-3,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(29.1=100)
A:
PF082407=ADH_N=FE(17.3=100)
C2:
PF082407=ADH_N=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCGTGTCCATTACTCCG
R:
CAACGCACTCCTCTGCCATAG
Band lengths:
148-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]