BtaEX6069973 @ bosTau6
Exon Skipping
Description
Quinone oxidoreductase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A6QQF5]
Coordinates
chr16:60860632-60863941:-
Coord C1 exon
chr16:60863845-60863941
Coord A exon
chr16:60861504-60861562
Coord C2 exon
chr16:60860632-60860697
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATTTTTAAAATTTGTTTTAGGAA
3' ss Score
9.25
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTCAGAGTTAATGTTCATTTCTGTGGGATTAACTTTGCTGATATTTTGGCGTGTCAGGGTCAGTATCAGGAGAGGCATCAACTTCCCTTCACACCCG
Seq A exon
GAATGGAGTTTTCTGGGATGGTACTGGAGACAGGCACAGATGTCAGCACGGTGAAAGAG
Seq C2 exon
GGAGATCGAGTCATTGGCCTGCCTGGCTTTAGTGGTATGGCTGAAGAATGCATCACTGACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046172-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(26.7=100)
A:
PF082407=ADH_N=FE(15.8=100)
C2:
PF082407=ADH_N=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGGGATTAACTTTGCTGA
R:
TCAGTGATGCATTCTTCAGCCA
Band lengths:
137-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]