GgaEX0005814 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:6915161-6916585:+
Coord C1 exon
chr8:6915161-6915257
Coord A exon
chr8:6916107-6916165
Coord C2 exon
chr8:6916520-6916585
Length
59 bp
Sequences
Splice sites
3' ss Seq
TACATGTACTTATCCTGCAGGAA
3' ss Score
9.31
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCCGTGTGCGTGTCCATTACTCCGGGTTAAATTTTGCTGATATCTTGGCCTGCCAGGGGTTGTACCAGGAGAAACATGCTCCTCCGTTCACCCCTG
Seq A exon
GAATGGAGTTTTCAGGGACTGTAATGGAGACAGGAGAGAACGTCAGTGCTGTGAAGGAG
Seq C2 exon
GGGCACAGGGTGATTGGTGTGACTGGCATCAGTGCTATGGCAGAGGAGTGCGTTGTCGATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(29.1=100)
A:
PF082407=ADH_N=FE(17.3=100)
C2:
PF082407=ADH_N=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCGTGTCCATTACTCCG
R:
CAACGCACTCCTCTGCCATAG
Band lengths:
148-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]