Special

MmuEX0007408 @ mm9

Exon Skipping

Gene
ENSMUSG00000033488 | BC026585
Description
cDNA sequence BC026585 [Source:MGI Symbol;Acc:MGI:2448516]
Coordinates
chr1:159392084-159395161:+
Coord C1 exon
chr1:159392084-159392180
Coord A exon
chr1:159394540-159394598
Coord C2 exon
chr1:159395096-159395161
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTAATCTTTCAATGTTTTAGGAA
3' ss Score
10.52
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTCAGAGTTGATGTTCATTTCTGTGGTGTTAACTTTGCTGATATTTTGGCCTGTCGTGGTCAGTATCAGGAAAAGCCTCCTCTTCCCTTTACACCGG
Seq A exon
GAATGGAGTTTTCTGGGGCTGTCTTAGAGACAGGAACAGATGTCAGCACTGTGAAAAAG
Seq C2 exon
GGAGATCGAGTTATTGGAGTAAGTAGCTTTCATGCTATGGCGGAGCAGTGCATCACGGACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033488_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF082407=ADH_N=FE(26.0=100)

							
A:
PF082407=ADH_N=FE(15.4=100)

							
C2:
PF082407=ADH_N=FE(17.1=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000044945





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000044945f3144A, ENSMUSP00000113664
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:178002162-178002220 
ALTERNATIVE
HsaEX0056841
(SEC16B)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:60861504-60861562 
HIGH PSI
BtaEX6069973
([1])
Chicken
(galGal4)
chr8:6587678-6587736 
HIGH PSI
GgaEX0005814
([2])
Chicken
(galGal3)
chr8:6916107-6916165 
HIGH PSI
GgaEX0005814
([3])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACTTTGCTGATATTTTGGCCTGT

				
R: 
CTTCTGGTCCGTGATGCACTG

				
Band lengths: 
132-191

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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