GgaEX0006181 @ galGal4
Exon Skipping
Gene
ENSGALG00000004578 | RABGAP1L
Description
rab GTPase-activating protein 1-like [Source:RefSeq peptide;Acc:NP_001012941]
Coordinates
chr8:7242237-7256452:-
Coord C1 exon
chr8:7256308-7256452
Coord A exon
chr8:7245753-7245846
Coord C2 exon
chr8:7242237-7242387
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTTTATTTTGCAGAGA
3' ss Score
10.91
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
TCTGAAGGAAAAAGCCACACCAGTGCTGGGGATCCCATTTATGAAGTTGCAAGTCTACAAAGAGAGTCTGCAAGAGAAGAGCAACTGCTCAGCCCAACAAGTGGAGGGGGGCCTGTATCATCCCAGGAAGATGAGGCAGAAGAAG
Seq A exon
AGAGTGATAATGAACTTTCCAGTGGCACTGGTGATGTGTCAAAGGATTGTCCTGAGAAGATTTTGTATTCCTGGGGAGAATTACTAGGGAGATG
Seq C2 exon
GCACAATAACCTTGTGGTGAGACCCAACGGATTGTCCACACTGGTGAAGAGAGGAGTTCCTGAGGCACTGAGGGCAGAGGTTTGGCAGCTGCTGGCAGGATGCCACGACAACGAGGCAATGCTGGATAAATACAGAATTCTCATCACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004578_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAAGCCACACCAGTGCTG
R:
GACAATCCGTTGGGTCTCACC
Band lengths:
174-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]