MmuEX6028615 @ mm10
Exon Skipping
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:160627215-160682182:-
Coord C1 exon
chr1:160682041-160682182
Coord A exon
chr1:160645308-160645401
Coord C2 exon
chr1:160627215-160627365
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTATATTTTTTTTTCTGTAGAGA
3' ss Score
7.85
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TCTGAGGGAAAAGGCCACAGCAGTGCTGGAGATGCAATATATGAAGTGGTGAGTCTGCAGAGAGAATCTGACAAGGAGGAGCCCATCACCCCTACTAGTGCTGGGGGCCCAATGTCACCACAGGAGGATGAAGCAGAAGAGG
Seq A exon
AGAGTGATAATGAACTCTCGAGTGGAACAGGTGATGTGTCAAAAGACTGTCCTGAGAAGATTCTCTATTCTTGGGGAGAATTGTTAGGAAGATG
Seq C2 exon
GCACAATAACCTTGGTGGCCGACCAAAAGGACTATTCACCTTGGTAAAGAGTGGTGTTCCTGAGGCACTAAGGGCAGAAGTATGGCAACTATTAGCAGGATGCCATGACAATCAGGAAATGCTGGATAAATACCGAATCCTTATCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721-'28-34,'28-33,33-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTGAGTCTGCAGAGAGA
R:
ACTTCTGCCCTTAGTGCCTCA
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types