RnoEX6044986 @ rn6
Exon Skipping
Gene
ENSRNOG00000002736 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:RGD Symbol;Acc:1304620]
Coordinates
chr13:78382228-78443183:-
Coord C1 exon
chr13:78443042-78443183
Coord A exon
chr13:78393372-78393465
Coord C2 exon
chr13:78382228-78382378
Length
94 bp
Sequences
Splice sites
3' ss Seq
TAACTTTTCTTTTTCTGTAGAGA
3' ss Score
8.78
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TCTGAGGGAAAAGGCCATAGCAGTGCTGGAGATGCAATATATGAAGTGGTGAGTCTGCAGAGAGAATCTGACAAAGAGGAGCCGGTCACCCCTACTAGTGGAGGGGGCCCAGCCTCACCCCAGGAGGATGAAGCAGAAGAGG
Seq A exon
AGAGTGATAATGAACTCTCAAGTGGAACAGGTGATGTGTCAAAAGACTGTCCTGAGAAGATCCTCTATTCTTGGGGAGAATTGTTAGGAAGATG
Seq C2 exon
GCATAATAACCTTAATGCCCGACCAAAAGGGCTACCCACCTTGGTAAAGAGCGGTGTTCCTGAGGCATTAAGGGCAGAAGTATGGCAGCTTTTAGCAGGATGCCATGACAACCAGGCAATGCTGGATAAATACAGAATCCTTATCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002736-'21-31,'21-29,24-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.384 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCACCCCTACTAGTGGAG
R:
ATTGCCTGGTTGTCATGGCAT
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]