BtaEX6046028 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94166260-94174299:+
Coord C1 exon
chr11:94166260-94166434
Coord A exon
chr11:94170007-94170100
Coord C2 exon
chr11:94174149-94174299
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTTGTTTATTAAAGATA
3' ss Score
6.85
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATAAAGCAAAAGGAGAGAAAGAACAATACTGACACTTTATACGAAGTTGTATGCTTGGAAAGTGAATCAGAGAGAGAGAGGAGGAAAACTACAGCCAGTCCCTCCATTCGCCTGCCACAGTCAGGATCTCAGAGTTCAATGATACCTTCTCCTCCAGAAGATGATGAAGAGGAAG
Seq A exon
ATAACGATGAGCCTCTCTTGAGTGGATCTGGTGATGTATCCAAAGAATGTGCAGAAAAAATTCTTGAAACATGGGGAGAACTGCTGTCTAAATG
Seq C2 exon
GCATCTCAACTTGAGCGTGAGGCCAAAGCAGTTGTCATCCTTAGTAAGAAGCGGTGTTCCTGAAGCTCTTCGAGGAGAAGTCTGGCAGCTCCTAGCAGGTTGTCACAACAATGACCACCTGGTAGAAAAATACCGAATTCTCATCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172-'24-22,'24-19,26-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=0.344 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAGCCAGTCCCTCCATT
R:
TAGGAGCTGCCAGACTTCTCC
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]