DreEX0007250 @ danRer10
Exon Skipping
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8782414-8797397:-
Coord C1 exon
chr10:8797229-8797397
Coord A exon
chr10:8794164-8794257
Coord C2 exon
chr10:8782414-8782564
Length
94 bp
Sequences
Splice sites
3' ss Seq
CACTGTGTTCGTCTTCCCAGATA
3' ss Score
9.76
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATGGAGAACAAGGAGAGGAAGAGTAACTCGGATACGCTGTATGAAGTGATGAGTTTAGAGAGCGAGACAGAAAGAGAAAGAAGGAAGACCACAGCGAGCCCCGGCGTACTGTCTTCTGGGTCCCATGGCTCCACGGTGCCATCTCCACCTGAGGATGATGAGGAAGAAG
Seq A exon
ATAACGACGAGCCATTATTAAGTGGCTCTGGAGACGTCTCTAAAGAATGTGCCGAAAAGATTCTGGAAACTTGGGGAGAACTGCTGTCGAGATG
Seq C2 exon
GCATCTGAACTTGGCAGTGCGTCCCAAACAGCTCCCGGCGCTGGTGCGCAGCGGTGTTCCAGAAGCCTTGAGAGGGGAGGTGTGGCAGCTACTGGCCGGATGTCATAACAATGACCATCTGGTGGAGGAGTACCGGACTCTCATCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967-'10-12,'10-9,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=0.344 C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACTGTCTTCTGGGTCCCA
R:
TATGACATCCGGCCAGTAGCT
Band lengths:
172-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]