MmuEX0038422 @ mm10
Exon Skipping
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37495583-37509078:+
Coord C1 exon
chr2:37495583-37495757
Coord A exon
chr2:37502868-37502961
Coord C2 exon
chr2:37508928-37509078
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTGCTTATTACAGATA
3' ss Score
9.12
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATAAAGCAAAAGGAGAAAAAGAATAATGCTGACACTTTATATGAAGTTGTGTGTTTGGAGAGTGAGTCAGAGAGAGAGAGGAGGAAAACCACAGCCAGTCCTTCAGTTCGCCTGCCACAGTCTGGATCCCAGAGCTCCATGATCCCCTCTCCCCCAGAAGATGATGAAGAAGAAG
Seq A exon
ATAATGATGAACCTCTCTTGAGTGGATTTGGGGATGTATCCAAAGAATGTGCAGAAAAAATTCTTGAAACATGGGGAGAACTGCTGTCAAAATG
Seq C2 exon
GCATCTCAACTTGAGTGTGAGACCGAAGCAGTTGTCATCCTTAGTGAGAAGTGGTGTTCCTGAAGCTCTTCGTGGAGAAGTCTGGCAGCTGCTAGCAGGCTGCCACAACAACGATCACTTAGTAGAAAAGTACCGAATTCTCATCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437-'20-29,'20-25,23-29
Average complexity
S
Mappability confidence:
92%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=0.266 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAAAACCACAGCCAG
R:
TCTCCACGAAGAGCTTCAGGA
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types