RnoEX0073394 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21745391-21756744:+
Coord C1 exon
chr3:21745391-21745565
Coord A exon
chr3:21751510-21751603
Coord C2 exon
chr3:21756594-21756744
Length
94 bp
Sequences
Splice sites
3' ss Seq
TAACCCCCCACTTGTTACAGATA
3' ss Score
7.21
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATAAAGCAGAAGGAGAAGAAGAATAATGCTGACACTTTATATGAAGTTGTGTGTTTGGAAAGTGAGTCAGAGAGAGAGAGGAGGAAAACTACAGCCAGTCCTTCAGTTCGCCTGCCACAGTCTGGATCCCAGAGCTCCATGATCCCCTCTCCTCCAGAAGACGATGAAGAAGAGG
Seq A exon
ATAATGATGAGCCTCTGTTGAGTGGATTTGGGGATGTATCCAAAGAATGTGCAGAAAAAATTCTTGAAACATGGGGAGAACTGCTGTCAAAATG
Seq C2 exon
GCATCTCAACTTGAATGTGAGACCAAAGCAGTTGTCATCCTTAGTGAGAAGTGGTGTTCCTGAAGCTCTCCGTGGAGAAGTCTGGCAGCTGCTAGCAGGCTGCCACAACAACGATCACTTAGTGGAAAAGTACCGGATTCTCATCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402-'27-32,'27-30,29-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=0.237 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083336=DUF1725=PD(10.0=28.6)
C2:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAGAGCTCCATGATCCC
R:
AGTGATCGTTGTTGTGGCAGC
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]