GgaEX1047822 @ galGal3
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
NA
Coordinates
chr17:9548256-9553280:+
Coord C1 exon
chr17:9548256-9548430
Coord A exon
chr17:9550197-9550290
Coord C2 exon
chr17:9553130-9553280
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTATTCTCTTGGCAGACA
3' ss Score
9.44
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATAAAGCAAAAGGACAGAAAGAATAACTCAGACACATTATATGAAGTTGTGTGTCTAGAAAGTGAATCAGAGAGGGAGAGAAGAAAAACCACAGCGAGCCCCTCTCTTCGCCTGCCCCAGTCAGGGTCACAGGGCTCAATGATTCCTTCCCCTCCAGAGGATGATGAAGAGGAAG
Seq A exon
ACAATGATGAACCTCTCTTGAGTGGTTCTGGAGATGTTTCCAAAGAGTGTGCAGAAAAAATTCTGGAGACGTGGGGAGAGTTGCTGTCCAAATG
Seq C2 exon
GCACCTCAATTTGAGTGTGAGGCCAAAGACACTGTCAGCGCTGGTGAGGAGTGGTGTCCCTGAGGCCCTGAGAGGAGAGGTCTGGCAGCTGCTGGCAGGGTGTCACAACAACGATCACCTGGTGGAGAAGTACCGAATCCTCATCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225-'10-14,'10-12,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTCACAGGGCTCAATGAT
R:
TCTCCACCAGGTGATCGTTGT
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]