DreEX6098570 @ danRer10
Exon Skipping
Gene
ENSDARG00000061757 | rabgap1l
Description
RAB GTPase activating protein 1-like [Source:ZFIN;Acc:ZDB-GENE-050208-389]
Coordinates
chr22:17306309-17318686:+
Coord C1 exon
chr22:17306309-17306435
Coord A exon
chr22:17318327-17318420
Coord C2 exon
chr22:17318536-17318686
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCTCCCGCTTTACAGATA
3' ss Score
10.9
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGCTCAGTGAAGGGCAGTCAGGACGATATGATGTATGAAGTGGTGAGTCTGGAGAAGCACTCAGAGTGTGGGTCTCAAGCTCGTGGCCGTCTGCAGTCCCCCACTGAGGAAGAGGAGCCAGAGGAAG
Seq A exon
ATAGCGACAGTGAGATCTCAAGTGGGACAGGCGATGTGTCAAAGGACTGTCCCGAGAAGATTCTGGAGTCCTGGGGAGGAATCCTCAACAGATG
Seq C2 exon
GCAGGGAAACCTGTTGACGCGACCCAAGGGTCTGTCTGCTCTGGTGAAGCCTGGGATCCCGGAGGCCTTACGAGCTGAAGTCTGGCAGCTCCTGTCTGGCTGCCACAACGATCAGGCCCTGCTAGAGCAATACCGCATCCTCATCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061757-'11-13,'11-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=0.344 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAGTCTGGAGAAGCACT
R:
AGACTTCAGCTCGTAAGGCCT
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]