GgaEX0006237 @ galGal3
Exon Skipping
Gene
ENSGALG00000004604 | CCBL1
Description
NA
Coordinates
chr17:5913651-5914522:-
Coord C1 exon
chr17:5914336-5914522
Coord A exon
chr17:5914074-5914150
Coord C2 exon
chr17:5913651-5913737
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTGTGCTGCTCCTCCTGCAGAAT
3' ss Score
10.38
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATGCTGTGGCTAAAGGTTTCCAGAGGGAGCTTGAGCACTATGGGAAACCAGACAGCTATTTTGTCCAACTGCCCAGGGAGCTGCAGCAGAAGAGAGACCAGCTGGTCCAGAGCTTGGTTGCAGTGGGGATGAAACCCATCATCCCTGAGGGCACCTACTTCTTGGTGGCGGACATCTCTGAGTTCA
Seq A exon
AATCTGAAGTCCCTGATGTCCCCAACTCCGATGAGCCCTATGACTCCAGATTTGCCAAGTGGATGGTCAAGAACAAG
Seq C2 exon
GGACTGGCGGCCATCCCCCTCTCGGCGTTCTACTGTGGGGCCCACAAGGACAACTACAACACTTTCATCCGGTTCTGCTTCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604-'14-14,'14-13,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(16.0=100)
A:
PF0015516=Aminotran_1_2=FE(6.4=100)
C2:
PF0015516=Aminotran_1_2=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCAGCAGAAGAGAGAC
R:
TTGTAGTTGTCCTTGTGGGCC
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]