MmuEX6100222 @ mm9
Exon Skipping
Gene
ENSMUSG00000039648 | Ccbl1
Description
cysteine conjugate-beta lyase 1 [Source:MGI Symbol;Acc:MGI:1917516]
Coordinates
chr2:30041187-30042063:-
Coord C1 exon
chr2:30041877-30042063
Coord A exon
chr2:30041712-30041791
Coord C2 exon
chr2:30041187-30041273
Length
80 bp
Sequences
Splice sites
3' ss Seq
AACCTCTTTTGTTGCCCCAGAGA
3' ss Score
6.93
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GCTGCAGTAGCCCAGTGCTTTGAGCGGGAGCAGCAACACTTTGGACAACCCAGCAGTTACTTTTTGCAGCTGCCACAGGCCATGGGCCTGAACCGAGACCACATGATCCAGAGCCTGCAGTCAGTGGGCCTCAAGCCCTTGATCCCCCAGGGCAGCTACTTCCTCATTGCAGACATCTCAGACTTCA
Seq A exon
AGAGCAGCATGCCCGACCTGCCTGGTGCTATGGATGAGCCCTATGATACACGCTTTGCCAAGTGGATGATCAAAAACAAG
Seq C2 exon
GGGCTGTCAGCCATCCCTGTCTCCACCTTCTATAGCCAGCCCCATCATAAGGACTTTGACCACTACATCCGATTCTGTTTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039648-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(16.0=100)
A:
PF0015516=Aminotran_1_2=FE(11.5=100)
C2:
PF0015516=Aminotran_1_2=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCAGTTACTTTTTGCAGC
R:
GGGCTGGCTATAGAAGGTGGA
Band lengths:
181-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: