RnoEX6016281 @ rn6
Exon Skipping
Gene
ENSRNOG00000016097 | Kyat1
Description
kynurenine aminotransferase 1 [Source:RGD Symbol;Acc:1306912]
Coordinates
chr3:8752812-8753689:-
Coord C1 exon
chr3:8753503-8753689
Coord A exon
chr3:8753337-8753416
Coord C2 exon
chr3:8752812-8752898
Length
80 bp
Sequences
Splice sites
3' ss Seq
AACCTCTTTTGTTGCCCCAGAGA
3' ss Score
6.93
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
GCTGCAGTAGCCCAGTGCTTTGAGCGGGAGCAGCAACACTTTGGACAACCCAGCAGCTACTTTTTGCAGCTGCCACAGGCCATGGAGCTGAACCGAGACCACATGATCCGTAGCCTGCAGTCAGTGGGCCTCAAGCTCTGGATCTCCCAGGGGAGCTACTTCCTCATTGCAGACATCTCAGACTTCA
Seq A exon
AGAGCAAGATGCCTGACCTGCCCGGAGCTGAGGATGAGCCTTATGACAGACGCTTTGCCAAGTGGATGATCAAAAACATG
Seq C2 exon
GGCTTGGTGGGCATCCCTGTCTCCACATTCTTCAGTCGGCCCCATCAGAAGGACTTTGACCACTACATCCGATTCTGTTTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016097-'18-17,'18-15,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(16.0=100)
A:
PF0015516=Aminotran_1_2=FE(6.7=100)
C2:
PF0015516=Aminotran_1_2=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTTTTTGCAGCTGCCAC
R:
GGCCGACTGAAGAATGTGGAG
Band lengths:
173-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]