HsaEX6063359 @ hg19
Exon Skipping
Gene
ENSG00000171097 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:1564]
Coordinates
chr9:131596019-131597946:-
Coord C1 exon
chr9:131597760-131597946
Coord A exon
chr9:131597602-131597681
Coord C2 exon
chr9:131596019-131596105
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTGTGGCCTCTGTCTCCCAGAGA
3' ss Score
8.07
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCTGCAGTAGCCGAGAGCTTTGAACGGGAGCAGCTGCTCTTCCGCCAACCCAGCAGCTACTTTGTGCAGTTCCCGCAGGCCATGCAGCGCTGCCGTGACCACATGATACGTAGCCTACAGTCAGTGGGCCTGAAGCCCATCATCCCTCAGGGCAGCTACTTCCTCATCACAGACATCTCAGACTTCA
Seq A exon
AGAGGAAGATGCCTGACTTGCCTGGAGCTGTGGATGAGCCCTATGACAGACGCTTCGTCAAGTGGATGATCAAGAACAAG
Seq C2 exon
GGCTTGGTGGCCATCCCTGTCTCCATCTTCTATAGTGTGCCACATCAGAAGCACTTTGACCACTATATCCGCTTCTGTTTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-'25-32,'25-30,26-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(16.0=100)
A:
PF0015516=Aminotran_1_2=PD(7.2=92.6)
C2:
PF0015516=Aminotran_1_2=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCCAGCAGCTACTTTGT
R:
TGGAGACAGGGATGGCCAC
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)