GgaEX0007061 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:373522-374479:+
Coord C1 exon
chr8_random:373522-373641
Coord A exon
chr8_random:373872-374006
Coord C2 exon
chr8_random:374366-374479
Length
135 bp
Sequences
Splice sites
3' ss Seq
CAACTTCTCTTTACCTGCAGATG
3' ss Score
11.2
5' ss Seq
AGGGTACGG
5' ss Score
7.86
Exon sequences
Seq C1 exon
ATGAAGATGAATGTGCTGTGCGAAATCCCTGTTCCCACACCTGCCACAATGCTGTAGGAACCTACCACTGCTCCTGTCCAAAGGGCCTCACCATTGCTGCAGATGGCAGAATGTGCCAGG
Seq A exon
ATGTTGATGAGTGTGTGCTGGGCAGGCACGCCTGCCACACCGACCAGGATTGCGAGAACAGCGCCGGCTCATACCACTGTGTGCTGCGCTGCAGGACTGGCTTCCGTAGGGCAGTGGATGGGCTCAGCTGCCAGG
Seq C2 exon
ATATTAACGAGTGTCAAGAGTCCAATTCCTGTCATCAGCATTGCATCAATACCGTAGGAAGTTTCCACTGTGGTTGCGATCCAGGATACCAGCTAAAGGGCAGAAAATGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'117-136,'117-135,118-136
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(15.0=7.3),PF146701=FXa_inhibition=PD(92.7=92.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=94.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATGAATGTGCTGTGCGA
R:
GCATTTTCTGCCCTTTAGCTGG
Band lengths:
229-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]