GgaEX0007442 @ galGal3
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8093116-8094462:-
Coord C1 exon
chr19:8094318-8094462
Coord A exon
chr19:8093461-8093609
Coord C2 exon
chr19:8093116-8093229
Length
149 bp
Sequences
Splice sites
3' ss Seq
ATAGAAGGTGTATCTTTCAGTTC
3' ss Score
2.38
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTAAACTGCCAAAAAGAAGATTCTGTCACCCAGAATGACATGAATGAATCATTTGAAGAAGAAGTCAGAGCTTTTCTCAGTGATGAAGAGCAGCTGCATCTTTTTGATGATCTCACAAAAGTTAATCCGGTGACAACGACGACAG
Seq A exon
TTCTGAAATGTCTTCAAGCAAGATACACGGTAAACTTGTTTTATACAAATGCTGGCTGCAGCCTGGTGGCTTTAAATCCATTTCAGCCCATCTCCTGCCTCTATTCACCTGAGCTTATGAGAGAGTACCATGTTGCTGTTCGCCCCCAG
Seq C2 exon
GATTTAAAACCTCACATCTTTGCAGTAGCTGAACAAACCTACAGAAATGTTCAAAGCCAGATAAACCCCATAAACCAGTCTATCATTGTAAGTGGAGAAAGTGGTGCTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(2.0=42.4)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAAAGAAGATTCTGTCACCC
R:
CTTCCCAGCACCACTTTCTCC
Band lengths:
252-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]