RnoEX0057230 @ rn6
Exon Skipping
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72203091-72206104:+
Coord C1 exon
chr10:72203091-72203229
Coord A exon
chr10:72203547-72203695
Coord C2 exon
chr10:72205991-72206104
Length
149 bp
Sequences
Splice sites
3' ss Seq
TAACACCATCTTTGCCTCAGTCC
3' ss Score
5.18
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGAATGGCCACAGTTTAGGCTCTGATACCCAAGGCAGGACATCCCTCAAGGGCGACCTAAGGGAGTTCCTGGGTGGGGAGGTCCCACTGCACCAGCTGGATGACCTCACCAAGGTGAATCCCGTGACACTGGAAACAG
Seq A exon
TCCTGAGGTGCCTGCAGGCCCGGTACACAGAAGACATATTCTATACCAATGCTGGCTGTACCTTGGTAGCTCTGAACCCCTTTAAGCACATCCCTCAACTCTATGCACCAGAACTGATGCAAGAGTACCATGCTGCACCTCAGCCTCAG
Seq C2 exon
AAATTAAAACCCCACATCTTCACAGTGGGTGAGCAGACCTACAGGAATGTCAAGAGCTTGATTGAGCCGATCAACCAATCCATTGTGGTCAGTGGAGAGAGCGGAGCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=0.040 C2=0.004
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(13.1=29.8)
A:
PF0006316=Myosin_head=FE(45.8=100)
C2:
PF0006316=Myosin_head=FE(34.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCACAGTTTAGGCTCTGA
R:
CTTTCCTGCTCCGCTCTCTCC
Band lengths:
248-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]