MmuEX0030466 @ mm9
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84698704-84701669:+
Coord C1 exon
chr11:84698704-84698842
Coord A exon
chr11:84699173-84699321
Coord C2 exon
chr11:84701556-84701669
Length
149 bp
Sequences
Splice sites
3' ss Seq
TAACAGCATCTTTGCCTCAGTCC
3' ss Score
3.19
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGAATGGCCACAGTTTAGGCTCTGATGCCGAAGGTAGGGCCTCCCTCAAGGGAGACCTAAGGGAGTTCCTGGGTGGGGAGATCCCACTGCACCAGCTGGATGACCTCACCAAGGTGAATCCCGTGACACTGGAAACAG
Seq A exon
TCCTGAGGTGCCTGCAGGCCCGATACACAGAAGACATATTCTATACCAATGCTGGCTGTACCTTGGTAGCTCTGAACCCCTTTAAGCACGTCCCTCAACTCTATGCACCAGAACTGATGCAAGAGTACCATGCTGCACCTCAGCCTCAG
Seq C2 exon
AAATTGAAACCCCACATCTTCACAGTGGGTGAACAAACCTATAGAAATGTCAAGAGCCTGATTGAGCCGGTCAACCAGTCCATCGTGGTCAGTGGAGAGAGTGGAGCCGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(9.0=29.8)
A:
PF0006316=Myosin_head=FE(31.6=100)
C2:
PF0006316=Myosin_head=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCACAGTTTAGGCTCTGA
R:
GGCTCCACTCTCTCCACTGAC
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: