HsaEX0041088 @ hg38
Exon Skipping
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36525228-36528202:-
Coord C1 exon
chr17:36528064-36528202
Coord A exon
chr17:36527551-36527699
Coord C2 exon
chr17:36525228-36525341
Length
149 bp
Sequences
Splice sites
3' ss Seq
TAAAGGCATCTCTGCCTCAGTCC
3' ss Score
2.61
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCAATGGCCACAATCCGGGGTCTGATGGCCAAGCCAGGGAGTACCTCAGAGAAGACCTGCAGGAGTTCCTGGGTGGGGAGGTCCTGCTGTACAAACTGGATGACCTCACCAGGGTGAATCCTGTGACACTAGAGACAG
Seq A exon
TCCTGAGGTGCCTGCAGGCCCGGTACATGGCAGACACATTCTACACCAATGCTGGCTGCACCCTGGTAGCCTTGAACCCCTTCAAGCCTGTTCCTCAGCTCTACTCGCCCGAGCTAATGAGAGAGTACCATGCTGCGCCTCAGCCCCAG
Seq C2 exon
AAACTGAAGCCCCATGTGTTCACTGTGGGTGAACAGACCTACAGGAATGTCAAGAGCCTGATTGAACCAGTCAACCAGTCTATTGTTGTCAGTGGAGAGAGTGGTGCTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259-'25-31,'25-27,27-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=0.036 C2=0.003
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(10.0=29.8)
A:
PF0006316=Myosin_head=FE(12.0=100)
C2:
PF0006316=Myosin_head=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAATCCGGGGTCTGATGG
R:
TTTCCAGCACCACTCTCTCCA
Band lengths:
243-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development