HsaEX0041087 @ hg38
Exon Skipping
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36527551-36532681:-
Coord C1 exon
chr17:36532527-36532681
Coord A exon
chr17:36528064-36528202
Coord C2 exon
chr17:36527551-36527699
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTTCACGTTATCTCTTCCAGGTC
3' ss Score
10.74
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GCGCTGGAGTGACTTGTCTGAGATTCCTCCAGAACTGAGCCCTTTGTTGGAACCATACCCCAGCCCATGGTCCCATGACTAGGTGGATAGTACTCCTTGTACCTCCTGCAACCCAGAACCCTGGCTGACCACTTTGAAGGAGGATGCTCCAGCAG
Seq A exon
GTCAATGGCCACAATCCGGGGTCTGATGGCCAAGCCAGGGAGTACCTCAGAGAAGACCTGCAGGAGTTCCTGGGTGGGGAGGTCCTGCTGTACAAACTGGATGACCTCACCAGGGTGAATCCTGTGACACTAGAGACAG
Seq C2 exon
TCCTGAGGTGCCTGCAGGCCCGGTACATGGCAGACACATTCTACACCAATGCTGGCTGCACCCTGGTAGCCTTGAACCCCTTCAAGCCTGTTCCTCAGCTCTACTCGCCCGAGCTAATGAGAGAGTACCATGCTGCGCCTCAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259-'18-27,'18-24,25-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=0.276 C2=0.036
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(1.1=50.0)
A:
PF0006316=Myosin_head=PU(10.0=29.8)
C2:
PF0006316=Myosin_head=FE(12.0=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGAGTGACTTGTCTGAG
R:
AGAGCTGAGGAACAGGCTTGA
Band lengths:
256-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development