HsaINT0108458 @ hg38
Intron Retention
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36528064-36532681:-
Coord C1 exon
chr17:36532527-36532681
Coord A exon
chr17:36528203-36532526
Coord C2 exon
chr17:36528064-36528202
Length
4324 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTTCACGTTATCTCTTCCAGGTC
3' ss Score
10.74
Exon sequences
Seq C1 exon
GCGCTGGAGTGACTTGTCTGAGATTCCTCCAGAACTGAGCCCTTTGTTGGAACCATACCCCAGCCCATGGTCCCATGACTAGGTGGATAGTACTCCTTGTACCTCCTGCAACCCAGAACCCTGGCTGACCACTTTGAAGGAGGATGCTCCAGCAG
Seq A exon
GTAAAACCTCAACCTTAGATAACCCAGGCCCTCAAGCACCTGCAGCATCTGTTGCTAGCCCTAACCTGGAAGGAAGGGAAAGCCCCCTTAAAGGTCTCTTTTCTCTCCTCAAATTGTCTCTCCAGTGCCTTTTACTCATCATCAAGAAACTCTTCCTGATACCTAATTTGAATCTGTCTTGTGGTTTTTAGCTCCTTTCTTTGGGATAGGTAAGGTGGGATGGGTAAGGGAATCCTTAGGGCACTTTGGGGATTCTGCAGAGGAAGTCCTGAGAGATGTCCCTGCCACCTGAATTGTTGAGGCATAGTAGAAGCCTGGGGCTTCCAAGAGGATGTGTTCCTTGAAGCTAAGCCTTAAAGAACTAGAAAGAATTAGCCACTTGGAGAAGGAAAATAAGCACTCCAGGCAAAGAGGTCAGCCTGTGCAGAAATGTAGGAGACTATGAGGAAATATAGAAGGATTCTAATGAGTGGATCATGGGTTACATGATCCCCATGTCTCTGCCTCTCTGAAAAGGCTACTGTTGCCCCAGGCCTGTAGGATTCCAAATCACCTTTTACAGCGGAGCTCTCTCTCATACCCATATCATCCTTCATGTGTAACTCTTGGTCCTGAGAGAGTGCCAGTACTTATTTGCTGACTTTTTATTTTACCAAGTGTTGCCAGGCACTGGGCTGAGGCAGATGTTGAGGTTGGTGCTTGCCCTCAAGGAGCTCAGAGTCTAGTGGAGTCTTGGGTAGGTAAGTGCCTGACATCAGCAAGGTAGCAGCCAGGTGTGGGGCCTGCCAGCATCAAGGGAGCCATAGTAGACACTGCAGCTTGACCTTCCAGCCATATGGCTCCTGGAACAGGTTTGAAGGTAAGAAGTGGGCAAAACAGTTGACTGCTCTGGGCTTTTTTCTTGCTTATTTTTAAACTTTTTTTTTCTCTTATTAAAAAAAAGGTATATCAATACAATGGAATAAAGCAAGTTACACAAAAATATAATACTTTTCAATGTTTTTAAAGTATGTAGGGGAAAAAACCTATGATATTCTCTAAAATATTGGTTATTTCTGGGTAGTATGATTATGGATTTTTATGCTCCTTTTGCTTATCTCTATTTTCCAATTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACCCTGTCATCCAGGCTGGAGTGTAGTGGCTTGATCTTGGCTCACTGCAATCTCTGCCTCCCAGGTTCATGCTATTCTCCTGCCTCAGCCTCCCGAGTAGTTGGGACTACTGGTGCTGGCCACCACGCCTGGCTAATTTTTTGTATTTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGACTACAGGCGTGAGCCACCGCGCCCAGCCTCCAAATTTTTTTTAATAATTTTTGTTTATTTATTTTTATTTTAGAGATGGAGTCTCACTCTGTAGACAAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCGTCTGCCTCAGCCTCCCAAAGTGCTTTTACAGGGGTGAGCCACCGCACCCAGCCGTGAGACCCTGTCTCTTAAATAAATAAATAAATAAGGCCAGGCACGGTGGCTCATGCCTGTAATCCCAATACTTTGGGAGGTCGAGGCGGGCAGATCACCTGAGGCCAGGAGTTCAAGACCAGTCTGGCCAACATGGCAAAACCCCATTTCTACTAAAAATACAAAAACTAGCCAGGTATGGTGGTGCATGCCTGTGATCCCAGTTACTTGGGTGGCTGAGGCATGAGAATCACTTGAACCTGGGAGACAGTGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGCGATAGAGCGAGACTCTGTGTCAAAAAAAAAAAAAAATACAAAAGCCACTTTTACGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGCCACTTTTAGAAGAAGAATAGCTAACCCCTTTTGGCAGATTCCAGATGGCCTTTCTAAATCCTTCGTGTGTTTTTGTGCTTGTGAGTATCTGTGAGGTAGGTACCATTATCCCATTTTACAGAAAAGAACTTTAAATAATTATTTAGAGACAGGGTCTCACTTTGTTGCCCAGTGCAGTGATATCCCCATAGCTCACTGTAGCCTCGACCTCCTGGGCTGAAGCAACCCTCCTGCCTCAGCCTCTAGAATAGCTGGGGTTACAGGCACATGCCATAATGCCCAGCTAATTTTTAAATATTTTTTATAGAGACAGGGTCACCTTGGCCTCCCTAAGTGCTGGGATTACAGGCTTAAGCCACTATGGCCAGCTGGAAATTTTTCTATTTTTATTTTTTACTTTAGAGACAAGGTCTTGCTCTGTTGGCCAGGCTAGAGTGCAGCGGTACAATCATAACTCATTGCAGCCTCGAACTTTTAGGCCCAAGTGGTTCTTCTACCTAAGCCTCCCAAGTAGCTGGGATTACAGGGACCAGATGAGGAGAATTGAGGCAGAAAGAGATTAAGAAATTAACATAAGAGTATATAACTGTAAGAGATAGAGTCAGGATTCAGAGCCAGACAACTAACTTTCAAGTCCAGGTACTTGATCACTATACTCAGATGCCTCTCTGGTTGGATCAGAACTCTTCATAAATTGTGTCTGTGTTTGTGAATGGTTTGTGTAGTGGTGGTTTTTTTTTCCCCTTCATAAAAGGAGAGGGATATGCATAGATATAGCTGTGCTCTGACCTCCGCAGTTACTCTGGAGGCCAAGAGCCTACCTTGTGCATTATAGTGGGCCCAAAGTTCAGAGAACAGGCAACAGTTTTGGAAGAAATGCATTACTGGGCCTCTTGGAGGAAATTTGCCACCATGGCTTATTTCTATGAGAGATTTGAAATTTTAGGCTCACCATTCTCATTGGAAATTCACCTGTTGTATCACAGACCTCTTCCTTCAAAAGCACATTTCAGCAAGATACCTGTCTTCAACCCCCACTCTGTCTTTCCTGCATCCCCAAAGGAGACAGTAGGAGAAATGGGACCACAGGAGGAAGTGGAGGGATGATACATCAAGAATGGGCAAAGGAAGATAGGGTGACTCATGCCTCTAGTCCCAATTACTCAGGAAGCTGAGGCAGAAGGATCACTTGAGCTCAGGAGTTGGAGGCTGCAGTGAGATATGATCATGCCACTGCACTGCAGCCTGGGTAGCAGAGCAAGACTCCATCTCTTAAAAAAGAAAGGAAAAAAAAAAGATAGGCAAGGGAGGAGAAAGGACCTGTTCCCTTGGTGCTTATTCTTGACCTCAGACAGCCGTCTGAGCCAGGCTTTCTCTCAAGCAGACTCGGGCCAAGGGAACCAATTCATTAGCCAGCCTAAATTTAAGCCACAAAAGGCAGGTGATGAAGACATGGGGCTACCTCTCTCAGAAGGTACAGCTGTTTTACATCAAAAGCTGAACTGTCTCTTCCCAAAAAGGCCTAACCCATGGTTCTTTTCCTTTGCAACATTCCTATAGCCTTATTTCTAATAAGGCTAGTAGCCTGGAAGTGCTACTTGCAAGTGGCCGGAGCTCTTGGCAGAAGAGATAGCATTTGTTGAGTACATGCTGTATGCCGGGCACTGACTAAATGCTTTGTATATCTCTTCTTTTCTTCCCAATAACCTTGTCAGTTGAGTTTATTTTCCTTTATTTACGAATAAACAAACTGTGACTCAAAGAGGGTAACTTACCCAGGCTCACAGGGCTACTAAGAGGCAGAACTGAAATTTGAACCCAACCAGACTATGATACCAGAGTCTCCTTCTACTATACAGGTTCCCACCCTTCTGTAGCTGCCAGCTGTTTTGAGTACCAGCTGTCGCGGCCTTCATGTTTTTTGGTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTAGCACAATGTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTTCCGAGTAGCTGGGACTACAGGTGCCCGCCACCATGCCTGGCTAATTTTTTGAATTTTTTTTAGTAGAGACGGGGTTTCACCGTGTTAACCAGGATGGTCTCGATCTCCTCACTTTGTGTCCTGCCCGCCTTGGCCTCCCAGAGTGCTGGGATTATAGGCATGAGCCACTGTGCCTGGCCTCACCTTCACGTTATCTCTTCCAG
Seq C2 exon
GTCAATGGCCACAATCCGGGGTCTGATGGCCAAGCCAGGGAGTACCTCAGAGAAGACCTGCAGGAGTTCCTGGGTGGGGAGGTCCTGCTGTACAAACTGGATGACCTCACCAGGGTGAATCCTGTGACACTAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259:ENST00000610930:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=NA C2=0.276
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(1.1=50.0)
A:
NA
C2:
PF0006316=Myosin_head=PU(10.0=29.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development