GgaINT0130559 @ galGal4
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8140692-8142183:-
Coord C1 exon
chr19:8142124-8142183
Coord A exon
chr19:8140837-8142123
Coord C2 exon
chr19:8140692-8140836
Length
1287 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTGGTGTTGATCCTCCCTAGGTA
3' ss Score
9.09
Exon sequences
Seq C1 exon
ATCACACGGCCGGAGTCGCCCGCAGCGCCGCGCTGGAGAAGTGCCAAAATGCCAAAGCAG
Seq A exon
GTAAAAGAAAACCGGGAATTGTGTGGCGCTGATTGCGTTTGTACCGCCGGGAAGCAATTCTGGGCGGTTTCCCTGCAGCCGGGGTTAGGTGACTGCTAACGGATATCCACCCCGCCTCAGGAGCTCGGCTGCACGCAGTAACTGTGCGGTTCTGAAGTGCATTACTAACGCAGTCTGTGCTGTGTTGCCCGTAACGGCAAGTAGTGATCTTTGTTACGCCGTTGACACGGACGGGGCAGCGTTAATGCATGGAGCACACACATCCTTCAGGGTCGCTTTTCAGCAGGACTGACAGCTCTGCAGTACAGCTGTCACAGCTCATTCCCTTTGCAAACACCGCTGCACTTCTGGCCAAGCAGTCGGCATTTCTTCCCACATGAACCCACTTTGGGCTGTGGGTGGAGGTGAACAAAAAGAAGCCCTTTCTCAGGTCCCGTGGTCCAGCTGCACGTTCAGAGCAGAATAGCAGCAAACACCGATGGCAGTGCTCAGCCACACTGAGCACCATTTTCTTCCTTGATACGTAAAGTATTGTATGACTGGGAATGAACTGCTTACGCTGTCTGCAAAACATAACAACGCCCCGAAATGTGTACATTACTCTTGCTCTGTTTTTTTAGGAATATGTGAATGGAGCTTTGCAGGATATTTTCCCATGTATTGATGAGCTCAGGTTATGCATTGGGAATGCTGCTAACTGAATTTCACGTTTTGTGTGGAAATAATGCGATGCCATCCATTAACTTGGTTAACTTGTAAAGAATTGCAGATCTATGCTATTAAACACAAAGGAGCAGGGTTACTCTGAAGGAGTTCCTGTCAAGGAGATGGGGAACAGATAAGGAATATCCAGAATGCAAAAATCAGGACTGGCATCTGTTCCCTTCCAGTCCCAACATAACAAGCAGGACCTGAAATCTCTCTTCTGGCTAAGTTTTCCATTACACTTGTGTAACAAGTGTGCCCTTCCAACTACTGTTGTCAAGGGCATGGGAGCCCAGAGGCTGAGATTTAAATACTTCCAGTGATTCAAAGGAGACAAATCTTCACCTAATATAATCTTCACCTCTTACAGCGTTAGCAGTTCTTTCCCCTGGCTGCAATGCACGCAGTCTTCAAGTTCAGTCTCAGGACCCTCTCCCTCTGCTCTGAAAATGAAAGTCTTTCCTAGGAAAACTGTTGTGTTGGACCTCATTGCTTTCTGCTCTGCAGTCAGTCCTGCCTGCTCCCCTCTGCCCAAGGCAGTGTGTGCGTTGAATGCCATGGACTGGTGTTGATCCTCCCTAG
Seq C2 exon
GTAAACTGCCAAAAAGAAGATTCTGTCACCCAGAATGACATGAATGAATCATTTGAAGAAGAAGTCAGAGCTTTTCTCAGTGATGAAGAGCAGCTGCATCTTTTTGATGATCTCACAAAAGTTAATCCGGTGACAACGACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.306
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(2.0=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACACGGCCGGAGTCG
R:
GTCGTCGTTGTCACCGGATTA
Band lengths:
203-1490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]