BtaINT0097871 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13184062-13188754:-
Coord C1 exon
chr19:13188601-13188754
Coord A exon
chr19:13184201-13188600
Coord C2 exon
chr19:13184062-13184200
Length
4400 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GTCCTGTTTTTCCCTCCCAGGTT
3' ss Score
11.18
Exon sequences
Seq C1 exon
GCTCTGGGGTGGCTTGTCTCAGAGATTCCTTGGGAGCTGAGCCCTTCGCAGGATCCATGCCCCAGCCTGTGCCCCCATGACCAGGTGGATAGCATTCCTCGTACCCGCGACCCAGAATCCTGGCTGACCACACTGAAGCAGGATGCTCCAGCAG
Seq A exon
GTAAAGTCCTCACCCTAAGATAACCCAGACCCTCAAGTACCTAAGGCAGCTCGGCCTCTTTCGTTTACCCGAATGATGCTTCCACTGCCCTGACCTGGAATGGAGGGAAAGACCCCTTTAAAGGCCTTTCTTCTTTTCTGTCTTCAGAGAGGCACCTCGCTGCCTTTTGTCTGTTGCTGAGAAGCTCTTCCTGATACCTAATTTGAATCTCTCCTGTTGTGGTTTTTAGCTCTTTTCCCTAGGATGGGTAAGACAAGCTGGGTGAGGGAATCCTTGGAGTGTTTTGGTGACCTTACAAGCCTGAACCTGTGAGGGAGTCCTGAGAGATGCTCCTCACAGCCTGAATTGTATAGACAAGTTGGAAGCCTGGGGCTTCCAAGAGGAGGTGTTCTTTAAAGCTGAGCCTTAAAGAAGTAAGAGTTGGGACTTCCTTGGCAGTCCAGTGGTTAAGACTCTGCACTCCCATCGCAAAGGGCACTGGTTCAACCCCTGGTTGGGGAACTCAGATCCTGCATGCCACATGGCTCAGCCAGAAAAAAGAAAGAGTAGGAATTAGTCAAATGGAGAAGGAAAGTAAGCAGTCCAGGCAGAGTCAGCCTGTGCAGAAATGTGGGAGAAGATGACCTATGTGGAAATAGACAAGAATTCTGATGAATGGATCACAGGGAACATGGGGAATGGGATGTGAAACCCGCCCTTCACTGTGGGCCTCTGCCGCTAAAGGCTCCTATGGCCCCAGGCCTGCAGGATTCCAAATCACCCTTCCCTGTGGTGCCTCACCTCCTACCCATATCATCCTTCACTTGCAGCTCTTGGTCCAGAGAGAATGCCAGATGTTAGCTGAATTTTTTTATTTACTGAGTGTTGGCATTGGGCCATGGAGAAGGAAATGGCAACCCACTCCAGCATTCTTGCTTGGAGAATCCCATGGACAGAGGAGCCTAGTGGGCTACAGTCCATGAGGTCGCACAGAGTTGGACATGAGTGAAGCAACTTAGCAGCAGCCGCAGCAGCCGTTGGGCCAAGGCAGATGTTTAAGATGATTCCTGGACTAGTGGAGTCCCAGGCAAGTAAGACAGGATAACTGAATGTGAGGTCAGCCAGCCTCAAAGGAACCCTGGTAGACTCTGCTGCTTGACCTCTTGATCCTTTGGCTCATGAAACAGGCTTGGAGGCCAGAGAGCAGGCAGCACAGCTACCTGCTCCAGGCTTTTTTTTTTTTTTGCAGAGGGAGCTTTTTTATTGTGCATTTTTAACTTCTTTCTCATTTAAAAAACAGTAATGTTTATCAGGGCTTCCCTTGTTGGCTCATCAGTAAAGAATCCACCTGCAATGCAGGAGATGACAGTTCGATCCCTGGGTTGGGAACATCCCCTGGAGAAGGAAATGGCAACTCACTCTAGTATTCTTGCCTGGGAAATCCTATGAACAGAGGAGTCTGCCAGGCTGCAGTCTGTGGGGTCACAAAAGAGTCAGACATGACTTAGCAATTAAACAACAACCATGTTTATCAAAACTGTACTAGCAGCTGCTCCGTGTTGCGCTCTTGCTGTATAGTAAGCACTATACTAAGCATTTTACACATACAATTTTGTTTAGTACTTGAGAAGGATACAGTATTACATACCCAATGCCATTATATCCCCATTTTGAAGATAGGGCTCAGAGCAGTTAGGTGACTTATTCAAGGTCACGTTCATTACAACGATGTGGGAAATATAGATAAGCAAAAAGAACATTACAATTACCCATAATTGTACTGCCCATAGATAACTGACATTTTAAAGAATACCCTAGATTTTTCTCCCTAAAAATTTTGAAAACATTTAAAGATATCTTTCTCTTTGTAACCTGCTTTATTCAATTGTAAGGAGGTACTATAATTTAAGCTACTACTTGGGCACTTGGGTTTTTTTGTTTGTTTGTTTTGCATTGTAAATGTTTCTATATACACAGAACATTCTTATGGCTTTTATATAGTATCATGTTCTAGAAGAATTGCAGGGTAGTTTTAAGGCCCTTGGTATGAAAAGTGAAAGAAAGTGAGGTTGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGGACTGTAGCCTACCAGGTTCCTCCGTCCATGGGATTTTTCAGGCAAGAGTACTGGAGTGGGTTGCCATTTCCTTCTCCAGGATATCTTCCCGACCCGGAGATTGAACCTGGGTGTCATCTGAGCCATCAGTATATTATTGCCTAATTATAAGAGCTACTTTTAAACAGAATGATAATAGCAAACTTTTGGTGGCAGAAACCAGATGTTTTTTCTAAATACTTTATGTGCTTGTTAGTATCTATGAGATCTACCACTACTACCACCATTCCCATTTTACAGATGAGGAACATTGGGGTGCAGAGAGACTAAGAAACTTACATAAGATTCTGTAACTAGGACGTGGTGGAATCAGGATTCAAACCCAGGCAATCTAGCTTTCAAGTCCAGCTCAAGAACCATGATACTCAGCTGCCTGTCTGGTTGGATCAGATCTGTTCATAAATTATGGCTGGGTGTGAGTGATTTCCTTTTTCCACTAGGGTAGAGGGATTTGCATGGACACAGTCACACTCTGACTTCAGCAGTTAATCCTGGAGATAAGAGTCCGCCTTGTGCATGCCTTGTGGTTGGGCCTAAGTTCAGAGAACAGGCAGCATCTTCGGAAGGAAACTTATCACTGGGCCTCTCAAATGACACTTGCCACTTTTGCTGGAGATTTTTGAACTCTAAGGTTCACTGGTCTCATTAGAAACCCGCACATAGGAACTTACGTGGTGGTCCGGTGGTTAAGAATCCACCTGCAGGGGACACGGGTTTGTCCAGAAAGATCCCATATTGCCACGGGCGACTGAGCTCTTGATCTGCAACTGCTGAAGCCCGCTTGCCCCAGAGCCCATGCTCAGCAACAGGAGAAGCCGCTGAAAGGAGAAGCCTGCGCACCCCAACTAGAGAGTAGCCCCTGCTCGCCGCAACCAGAGAAAGCCCCCACACAGCAGTGAAGACCCAGCACAGCCGAATAAATACATAAAAATTTCAAAAAAAGAAACCCACACATGTTATATCACAGACCCCTTCTTCCAAAAGCAGATTTCACCCAGGTTACTGCCTGTTCCGCGCACCTTCCCTGCCACCCTCTGGGAGAAGAGAGGAGAAGTGGGATCACAGGAGGAAAGTGGGGAGAAGTTATGTAAAGCGTTGGTATCAGGGATGGGCAAGGGCGAGGCAGAAAAAGCCTCTTCCCCACTGGTGCTTGTTCTTGACCTCATCTGCTCTCAAGTAGACCAGGGCAGCAGGAGCTAATTAGTTAGCGATCCTAAATTCAGTCCCAAGAGGCACGTGATGAAGGCATGGTACTACCTCACAGCTGATAACGTCTGTATCAAAAAAGGCCCAAACCCTGGTTCTTTCCCTTCGCAGTACCCCCCACCTCGGGCCTCACCCCCGCCAGCCCAGTAAGGTCGGGCACTGACTCACCTGAAAGCTGGAACGCATGGCAGAGAAGAAGGGATCGCATTTATTGATTTCCTGAGTACATGCTTCCCTGATGGCTCAGCGGGTAAAGAATGCGCCTGCAGTGCTGGAGACAGAGGGAATGAGTTTGATCCCTGGGTCGGGAAGATCCCCTGGAGGAGGGCATGGCACCCCACTCCAGTACTCTTGCCTGGAGAACCCCATGGACAGAGGAGCCTGGCGGGCTTCAGCCCTATGGGGTCACAAAGAGTCAGACACCACTGAAACAGCTAACACTTCCACTTTGAGTACATTCTCTGTGCCAGGCACCAAGGGCTTTGCTTTCTTCCCCCCAACATTTGTTTATTTGGCTGCATCAGGTGTCAGTTGCTGCACTCAGGGTGTTCATTGCATCGTCTGGTATCTTTCCTTGCAGCACGGAATCTCTCGTTGTGGCACGCAGGTGCAACACTTGGGCTCTCCAGGTGTGGCCCACTGCGTCCAGAGCGCACAGGTTCAGTAGTTGTGGCTTGCGGGCCTAGTTGCTCTGCAGCAACATGGGATCTTAGTTCCCTGACCAGGACTCAAACTCACATCCCCAGCCTTGCAAGGCAGATTCTTAATCATTGCTTCACCAGGGAGGTCCCCAACTAAGCGCTTTCCATCTCTTTCTTGTTTTTCTTCCAAACAACCTTGTGAGTTGATTCTGTTTTCCTTTATTTACAAATAAAGAAGCCCCCGCTTAACCTCAGAAAGGTTAAGAAGCTTATGCAGGCTCACAGGTCTAGTTAATGGTGGAGGTACAATTTGTACAACCAGACTGTGATCCCAGAAGCTGGTTTTCTGTCTCTTGTACAAGCCCTCACCCTGACGGAGCTGCCAGCCGGTCTGAGTCCCAGCGCTTCTGGTCCTGTTTTTCCCTCCCAG
Seq C2 exon
GTTAATGGCCACGGTTCAGGCTCTGCTGCCCACAGCGGGGAGTCCCTGAGGGAAGACCTGAAGGAGCTCCTGGGTGGGGAGGTCCCGCCGCAGCAGCTCAATGACCTCACCAAGGTGAATCCTGTGACGCTGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.702
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(2.0=29.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]