Special

MmuINT0104094 @ mm9

Intron Retention

Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84696088-84698842:+
Coord C1 exon
chr11:84696088-84696229
Coord A exon
chr11:84696230-84698703
Coord C2 exon
chr11:84698704-84698842
Length
2474 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
CTTGTGTTGTTCCCCTCCAGGTG
3' ss Score
12.52
Exon sequences
Seq C1 exon
GTTTCAAGATGACTCGGCTGCGATTCCCACACTCCTGAGTCTTCTGCTGGAAGGATGGCCTCATGACCAGGTTGACAGACAGCACTCTGTGTCGGTGACACAGAACTCTGGCCGACCACACTGAAGCACGATGCTCCAGCAG
Seq A exon
GTAATCCCTCAAGCCCAAGTAACTGAGCACTTTCCCTCTTGCCTGTCTGAAGAAAGACTGCAGTGCTTCTAGTGAGGGACTCTTCAGAGTATCCCAGGACTCTTCCTGATACGCCCTTTTTGTGATTTGGTGGCTCTTTTCCTTGGAATGGTTATGGGTAGATAGGTAAAGAAATCAATCCAAACCACGCTGATAACCTAAAACGGGGGCGTATCCTGACAGAAGTCCCTGACAGACTGTTTTGTTGTATCACTTTGGAAGTTTGTACACTGAATCTGATCCTTTAAGAATAATCTAGAGGCCCAGCAGCGATGGTGGTGCATGCCTTCAGTCCCAGCACTTTGGGAAGCAGAGACAGACAGATATCTGAGTTTGAGGCCAGCCTGGTCCACAAAATGAGTCCCAGGACAGCCAAAGCTACACAGAGAAACCCTGTTGGGATAGGGGGGGGGGTTTGGGGGGGGGGGGCTGGATTAGCCAAGCAAGCTAGGCTTGGTAGCACACATCTTTACTGCCAGCACTTGGCATAGGCAGGGAGATCTCTGTGAGTTCAATGTCTAAAAGAGAGAGAGAGAAAACCTGTCTTAAAAAAAAAAAAGAAAAGAAAAAGAATTATCCAAATGGAGAAGGAACATGGACGGTTCAGACAAGAGGTGAGCCTGTGCAAAAATGTAGGAGAAGGTAAGTAGCTTAGGTGGAGTCCAGCATTCTGCCTGTGAAAAGGCTAGTATCCCTGGTCTGCAAGGTGGGAACCACCCTTCACTGTGGAGTTCTGTCTCATACACATAGCATCCTTTCTTTGTAAGTAGCTCAGATCCAGACAGCACAGTGGTATGTATTTGCTGAAATTTTATTTTACTAAATTTTGCCCCATACCAAGGGCTCAGGGAGTTTGTGCTCTAGTGAGCCCCAGCAGAATAACCAAGGTAAAGCTTGTCAGGCTCAAGAAAGCCATGGTAGATGCTGCTGGACCATTGAGCCATTTGCCTGGAAATAGACTTGAAGGCTAAGAACAGTAGGCAAGACAGTTATCTGCTCTGGGCTGTTGTATTTTCTTTTTTCCTTATTCCAAAAGTAATCATCTTTACCACAGCCGTACTAGTGACTATGCTATGCTTGGCCCTTGTTAATAGGAGGCACTCTGCTTGAGAGTGTTGTTTCAGTGAAAATATATAGTAGTGTGTACTACACAGTGTTCTTATGTCCCCGTCCTGGAGAGACAGGTCAGACAGGTGAAATGACTGTCTCAAGGTCACATTCATCAACAGGAATTTGGAAGAACAAAGGAAGGCAATTGAAAAGGACACTAAAGTTACCTCACAACAGTGTCCAAACACAACATTTGTGAAGAACATTTAGACTTTCTGTTTGGCTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTGAACTCAGAAATTCTCCTGCCTCTGTCTCCCAAGCGCCTGGACCAAAGGTGTGCGCCATTACCCAGCACAATCTAGCTTTCTAATCCAAGCTCTTGATCATCACACTCAACTCCCAGGTGAATCAACACTGTTCCTAACCAGGCATGGTGGCGCGCGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTACACAAAGAAACCCTGTCTCCAAAACCAAACCAAACCAAAAAACTGTTCCTAAATTGTCGCTGGGTTGTTGTTTTTTTAAGTAGGCTCCGCCTTTCCTTCCTCTCCCCTTCCCTTCTCTTTCTTGTCTTTCTTCTGTCCTTACCCTTCCAAAGATTTAGCTGTGCTGGCTGCAGCAATTACCCTAGCTAGCAAGAGCCTTGCTTTGTACATTATGATGTGTCTGAGCCTCACAGTCTAAAAGAAACTCATTACAGTGCTGCTCAAATGAAACAAGCTACCTTGGCATGTTCCTGAAGGGTTAAGCGTTGAGAGTTTTTAATCAGTTTTGTTGGAAGCACACATCATACCAAGACTTTAGCCTCCTTAAGCTGATTCCAGCCAGGCTCCTCTTCCCTCTCCATCCTCTCTGGAGGACAGACAGCAGCTCTGTAAGGCTGGTAGACTGTAGCCTAAAAGCTGCCTTAGCTGGAGCTCATAGCAGAGGAGACAGGACGGCATTGATTATAAGACGTACTATCAAGGCCTTGATTCAATGTTGTGTGTCTCTTTCCCCCCATAACCTGGTAGTTGAGTTTATCTTTCTTTATTGATGGTGGAGGTGGGGAACGTGGCTCTTAGAGGTGAATTATCCAGGCTTTCATGCTAATAAGTAGCAGAGCTGAAACTTGAGCCACCTGGATCTTGTAGAAACCTGTTCTTTCTCCTCTGCAGGCTCCACCCATATTACCTGCCAACTGGTCTGAGACCCAGGTCTCATGGCTCTTGTGTTGTTCCCCTCCAG
Seq C2 exon
GTGAATGGCCACAGTTTAGGCTCTGATGCCGAAGGTAGGGCCTCCCTCAAGGGAGACCTAAGGGAGTTCCTGGGTGGGGAGATCCCACTGCACCAGCTGGATGACCTCACCAAGGTGAATCCCGTGACACTGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-Myo19:NM_025414:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion (1st CDS intron)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.085
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0006316=Myosin_head=PU(9.0=29.8)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000091502f6139A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000020837, ENSMUSP00000091502, ENSMUSP00000091502f763A, ENSMUSP00000091502f764A
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr17:36528203-36532526 
ALTERNATIVE
HsaINT0108458
(MYO19)
Human
(hg19)
chr17:34884034-34888356 
ALTERNATIVE
HsaINT0108458
(MYO19)
Rat
(rn6)
chr10:72200865-72203090 
LOW PSI
RnoINT0096971
(Myo19)
Cow
(bosTau6)
chr19:13184201-13188600 
LOW PSI
BtaINT0097871
(MYO19)
Chicken
(galGal4)
chr19:8140837-8142123 
ALTERNATIVE
GgaINT0130559
(MYO19)
Chicken
(galGal3)
chr19:8094463-8095749 
ALTERNATIVE
GgaINT0130559
(MYO19)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"