RnoINT0096971 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72200721-72203229:+
Coord C1 exon
chr10:72200721-72200864
Coord A exon
chr10:72200865-72203090
Coord C2 exon
chr10:72203091-72203229
Length
2226 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
CTTATATTGTTCCCCTCCAGGTG
3' ss Score
11.93
Exon sequences
Seq C1 exon
GTTTCGAGATGACTTGTGGGCGATTCCCACACACCTGAGTCTTCTGCTGGAGTGATGGCCTCATGACCAGGTTGACAGACAGTACTGCCAGTGTCTGTGACACAGAACTCTGGCTGACCACACTGAAGCACGATGCACCAGCAG
Seq A exon
GTAATCCCTCAAGCTGATGTAACTGAGCACCACCAGGCACTTTCCTGTTTGCTTGTCTGAATAAAGGCTGCGGTGCTTCTAGTGAAGGACAGGAAAGACCCTTCTTTTCTCTTCAGATAGCTATCCCAGGACGCTTCCTGATAGCTAACTTGAATGACTCCCTTTTTGTGGTTCTGTGACTCTTTTCCTTGGAATGAATAAGGGGAGATAGGTAAAGAAGTCCAAATCGTGTTGATAACCTAAAATGGGGGCATATCCTGACAGAAATCCCTGATAGACTGTCACTTTAGTCCCAGCACTTGGGAGGCAGAGGCAGGCAAATCTCTGAGTTTGAAGTAGGCCTGGTCCACAAAATGAGTTCCAGGACAGCCAGAGCTCAGAAACCCTGTCTGAGAGAGAGAAACAGAGAGAGAAAGAGAAGGAGGAGGAAGAAGAGGAAGAGGAGAAGAAAGAATTAGTCAAGCAAGCTGGGCATGGTAGGTAGCACACAGACAAGGAGATTTCTGAGTTCAATGTCTAGAGAGAGAGACAGAGTCTGTCTTTTAAAAAAAAGAAGAAAAGAGAAAAAGAATTATCCCCGTGGAGAAGGAACATGAACAGTACAGACAGGAGGTGAGCCTGTGCAAAAATGTAGGAGAAGGCAGGTAGCGTGGGTGGAGTCTGCCATTCTGCCTCTGAAAAGGCCCGGTATTCCTGGCCTGCAAGGTGGGAACCACCCTTCACCATGGAGCTCTATCTCATACACGTAGCACCCTTTCTTTATAAGTAGCTCAGATCCAGAGAGCTACTTATGTATTTGATGAAATTTTATTTTACTAAATTTTGCTCAATACTAAGGGCTCAGGGACTTTGTGCTCTAGAGAGCCCCAGCAGAATAACCAAGGTAGGACTGGTCAGGCTCAAGAAAGCCATGGCAGATGCTACTGGACTATTGAGCCATTTGCCAGGAAATAGACTGCTCTACGTTGTTGCATTTTCTTTTTTCCTTATTCCGAAAGTAATCATCTTTACCACAGCTATACTAGTGACTGGCCTGTGTGTGGCCCTTGTTAATAGGAGGCACTAAGTTTGAGTATGTTGTTTCCGTGAGGAATGCAGGATGTGCTACACAGTGCTCTTATGAACCTTCTGGAGAGAAGGCTCAGACAGAATGACTGCCTCAAGGTCACCTGCCACATTCTTTATCAGGAATGTGGAAAAACAAAGGAAAGCAATCGAAAAGGACATTGAGGTCACCTGTCACAGTATCCAAACACAACATTGTAAAGAACATTTAGACTTTTTTTTTGTTTTTGAGCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGTCGATCGGTAGACCAGGCTGGCCTGAGCTCAGAGATCCACCTGCCTCTGCCTCCCAAGCACTGGGACTGAAGGCCTGTACCACCACCCAGCACAATCTAGCTTTCTAATCCAAGCTCTTCATCACCATACTCAACTCCCAGTTGAATCAGAACTGTTCCTAAATTGTAGCTGGGTTTTGTTTTGTTTTTAAGTAGGCTCTTTCTCCTTTCCTTTCTCTTCCTTCCTCTCCCCTTCCCTTCGCTCTTCTTTCATCTGTTCTTGCCCTTCCAAAGATCCAGCTGTGCTGGCTGCAGCAGTTACCCTAGATAACAAGAGGCTGCTTTGTATGTTGTGATGTGTCCAAGCCTCACAGTCTTTAAAACAAACTCATCACGGTGTTGCTCAAACGGAACAAGCTACCTTGGCTGCTCCTGAGGGGTTAAGCATTGAGAGTTCATCCGTCTTGTCAGAAACACATCATACCGAGACTCTGGCCTTCCTGAGCTGATTCCAGCCAGCTGAGCCTCCTTCCACTCTATCCTCCCTGGAGGATAGACAGCAGCTCTGTAAGGCTGGTAGCCTGTAAAAACTGCCTCAGCTGGAGCTCACAGCAGAGGAGACAGGACGGCATTGATTACTAATACATACTATCGAGGCCTTGACCAAGTGTTCTGTGTGTCTCTCTTCCCCCATAACCTGGTAGTTGAGTTTTTCTTCCTTTATTTATGGCAGAGGTGGGGAACGTAGCTCTTAAAGGTGAATTATCCAGGCTCTCGTGCTAATAAGCAGCAGAGCTGAAACACGAGCCACCTGGATCATGTAGAAACCTGTTCTTTCTCCTCTGCAGGCTCCACCCATATTACCTGCCAACTGGTCTGAGACCCAGGTCTCATGGCTCTTATATTGTTCCCCTCCAG
Seq C2 exon
GTGAATGGCCACAGTTTAGGCTCTGATACCCAAGGCAGGACATCCCTCAAGGGCGACCTAAGGGAGTTCCTGGGTGGGGAGGTCCCACTGCACCAGCTGGATGACCTCACCAAGGTGAATCCCGTGACACTGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.319
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(13.1=29.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]