BtaEX6084916 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13183574-13188754:-
Coord C1 exon
chr19:13188601-13188754
Coord A exon
chr19:13184062-13184200
Coord C2 exon
chr19:13183574-13183722
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTCCTGTTTTTCCCTCCCAGGTT
3' ss Score
11.18
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GCTCTGGGGTGGCTTGTCTCAGAGATTCCTTGGGAGCTGAGCCCTTCGCAGGATCCATGCCCCAGCCTGTGCCCCCATGACCAGGTGGATAGCATTCCTCGTACCCGCGACCCAGAATCCTGGCTGACCACACTGAAGCAGGATGCTCCAGCAG
Seq A exon
GTTAATGGCCACGGTTCAGGCTCTGCTGCCCACAGCGGGGAGTCCCTGAGGGAAGACCTGAAGGAGCTCCTGGGTGGGGAGGTCCCGCCGCAGCAGCTCAATGACCTCACCAAGGTGAATCCTGTGACGCTGGAGACAG
Seq C2 exon
TCCTGAGGTGTCTGCAGGCCCGGTACATGGCCGACACGTTCTACACCAACGCCGGCTGCACCCTGGTGGCTATGAACCCCTTCAAGCCTGTCCCTCAGCTCTACTCGCCCGAGCTGATGCGAGAGTACCACGCTGCTTCTCAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675-'5-7,'5-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.702 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(2.0=29.8)
C2:
PF0006316=Myosin_head=PU(6.8=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTGGCTTGTCTCAGAGAT
R:
TAGAGCTGAGGGACAGGCTTG
Band lengths:
252-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]