GgaEX6017717 @ galGal4
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8139835-8142183:-
Coord C1 exon
chr19:8142124-8142183
Coord A exon
chr19:8140692-8140836
Coord C2 exon
chr19:8139835-8139983
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTTGATCCTCCCTAGGTA
3' ss Score
9.09
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATCACACGGCCGGAGTCGCCCGCAGCGCCGCGCTGGAGAAGTGCCAAAATGCCAAAGCAG
Seq A exon
GTAAACTGCCAAAAAGAAGATTCTGTCACCCAGAATGACATGAATGAATCATTTGAAGAAGAAGTCAGAGCTTTTCTCAGTGATGAAGAGCAGCTGCATCTTTTTGATGATCTCACAAAAGTTAATCCGGTGACAACGACGACAG
Seq C2 exon
TTCTGAAATGTCTTCAAGCAAGATACACGGTAAACTTGTTTTATACAAATGCTGGCTGCAGCCTGGTGGCTTTAAATCCATTTCAGCCCATCTCCTGCCTCTATTCACCTGAGCTTATGAGAGAGTACCATGTTGCTGTTCGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.306 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(2.0=28.6)
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACACGGCCGGAGTCG
R:
CGAACAGCAACATGGTACTCTCT
Band lengths:
202-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]