RnoEX0057225 @ rn6
Exon Skipping
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72202920-72203695:+
Coord C1 exon
chr10:72202920-72203020
Coord A exon
chr10:72203091-72203204
Coord C2 exon
chr10:72203547-72203695
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTTATATTGTTCCCCTCCAGGTG
3' ss Score
11.93
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GCTCTTAAAGGTGAATTATCCAGGCTCTCGTGCTAATAAGCAGCAGAGCTGAAACACGAGCCACCTGGATCATGTAGAAACCTGTTCTTTCTCCTCTGCAG
Seq A exon
GTGAATGGCCACAGTTTAGGCTCTGATACCCAAGGCAGGACATCCCTCAAGGGCGACCTAAGGGAGTTCCTGGGTGGGGAGGTCCCACTGCACCAGCTGGATGACCTCACCAAG
Seq C2 exon
TCCTGAGGTGCCTGCAGGCCCGGTACACAGAAGACATATTCTATACCAATGCTGGCTGTACCTTGGTAGCTCTGAACCCCTTTAAGCACATCCCTCAACTCTATGCACCAGAACTGATGCAAGAGTACCATGCTGCACCTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852-'3-3,'3-2,4-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.319 C2=0.040
Domain overlap (PFAM):
C1:
NA
A:
PF0006316=Myosin_head=PU(13.1=29.8)
C2:
PF0006316=Myosin_head=FE(45.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTAAAGGTGAATTATCCAGGC
R:
TGAGGTGCAGCATGGTACTCT
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]