GgaEX6017717 @ galGal3
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8093461-8095809:-
Coord C1 exon
chr19:8095750-8095809
Coord A exon
chr19:8094318-8094462
Coord C2 exon
chr19:8093461-8093609
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTTGATCCTCCCTAGGTA
3' ss Score
9.09
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATCACACGGCCGGAGTCGCCCGCAGCGCCGCGCTGGAGAAGTGCCAAAATGCCAAAGCAG
Seq A exon
GTAAACTGCCAAAAAGAAGATTCTGTCACCCAGAATGACATGAATGAATCATTTGAAGAAGAAGTCAGAGCTTTTCTCAGTGATGAAGAGCAGCTGCATCTTTTTGATGATCTCACAAAAGTTAATCCGGTGACAACGACGACAG
Seq C2 exon
TTCTGAAATGTCTTCAAGCAAGATACACGGTAAACTTGTTTTATACAAATGCTGGCTGCAGCCTGGTGGCTTTAAATCCATTTCAGCCCATCTCCTGCCTCTATTCACCTGAGCTTATGAGAGAGTACCATGTTGCTGTTCGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.211 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(2.0=28.6)
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACACGGCCGGAGTCG
R:
CGAACAGCAACATGGTACTCTCT
Band lengths:
202-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]