GgaEX0007721 @ galGal3
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
NA
Coordinates
chr4:2281599-2283193:+
Coord C1 exon
chr4:2281599-2281658
Coord A exon
chr4:2282042-2282111
Coord C2 exon
chr4:2282902-2283193
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTGAATCTCTCCTAGGAG
3' ss Score
8.48
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AAGGCCTGTCTCGGAAGGGAGGTGTGCCCCAAACTGAGAAGGTGAGGAGAATACAGTCAA
Seq A exon
GAGAAAAGAAGTGAACGGGCCAGAAGATCAGAAACTGCCAGGCCTGAAACTGTGAACTCTGCTGAGAGCA
Seq C2 exon
TTCCGGTCTCTGACGAAGACTCTGATGCAATGGTGGATGATCCCAACGATGAGGACTTTGTTCCTTTCCGTACCCGCCGCTCCACTCGCATGTCGTTGCGCACTCAGATAGCTCAGCGAGCCGCCCGCTCCTCTGCTGCCAAGATGACGTGTGCCAACTGCCGGACCCCGCTGCAGAAGGGCCAGACTGCCTACCAACGGAAGGGACTCCCTCAGCTCTTCTGCTCCAGCTCCTGTCTCACCACCTTCTCGAAAAGACCGCATGGCAAGAAGATGTGCACCTTCTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533-'5-6,'5-4,6-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.411
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=41.8),PF064679=zf-FCS=PU(28.9=13.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAAACTGAGAAGGTGAG
R:
GTCATCTTGGCAGCAGAGGAG
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]