MmuEX6045431 @ mm10
Exon Skipping
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101416167-101417330:-
Coord C1 exon
chrX:101417287-101417330
Coord A exon
chrX:101416909-101416981
Coord C2 exon
chrX:101416167-101416461
Length
73 bp
Sequences
Splice sites
3' ss Seq
CCCCCGCCCCTCTTTCCAAGGTA
3' ss Score
9.4
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GAGATGGCCTGACTGGGAAGGAGATTGAGAAGCCGCCTGAGAGG
Seq A exon
GTACAGAAGAGAAGCGAGCGCGTTAGAAGAGCAGAACCTCCAAAGCCTGAGGTTGTGGACTCCACTGAGAGCA
Seq C2 exon
TTCCAGTGTCAGATGAGGATTCTGATGCCATGGTAGATGACCCCAATGATGAGGACTTTGTGCCATTCCGGCCCCGGCGCTCTCCTCGCATGTCCCTGCGCTCAAGTATGGCACAAAGGGCTGGGCGCTCTTCAATGGGCACCAAGATGTCTTGTGCACATTGCCGGACACCACTGCAGAAGGGGCAGACGGCCTATCAGCGCAAGGGGTTGCCTCAGCTCTTCTGTTCTTCATCTTGTCTCACTACTTACTCCAAGAAGCCCTTGGGCAGAAAGACCTGTACCTTCTGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-'10-18,'10-16,11-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=1.000 C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=41.4),PF064679=zf-FCS=PU(28.9=13.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGATTGAGAAGCCGCC
R:
TCTTGGTGCCCATTGAAGAGC
Band lengths:
175-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types