GgaEX0007721 @ galGal4
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2272599-2274193:+
Coord C1 exon
chr4:2272599-2272639
Coord A exon
chr4:2273042-2273111
Coord C2 exon
chr4:2273902-2274193
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTGAATCTCTCCTAGGAG
3' ss Score
8.48
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AAGGCCTGTCTCGGAAGGGAGGTGTGCCCCAAACTGAGAAG
Seq A exon
GAGAAAAGAAGTGAACGGGCCAGAAGATCAGAAACTGCCAGGCCTGAAACTGTGAACTCTGCTGAGAGCA
Seq C2 exon
TTCCGGTCTCTGACGAAGACTCTGATGCAATGGTGGATGATCCCAACGATGAGGACTTTGTTCCTTTCCGTACCCGCCGCTCCACTCGCATGTCGTTGCGCACTCAGATAGCTCAGCGAGCCGCCCGCTCCTCTGCTGCCAAGATGACGTGTGCCAACTGCCGGACCCCGCTGCAGAAGGGCCAGACTGCCTACCAACGGAAGGGACTCCCTCAGCTCTTCTGCTCCAGCTCCTGTCTCACCACCTTCTCGAAAAGACCGCATGGCAAGAAGATGTGCACCTTCTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533-'3-9,'3-5,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=41.8),PF064679=zf-FCS=PU(28.9=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGCCCCAAACTGAGAAG
R:
AGTTGGCACACGTCATCTTGG
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]