HsaEX0072899 @ hg19
Exon Skipping
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70470282-70471451:-
Coord C1 exon
chrX:70471408-70471451
Coord A exon
chrX:70471028-70471094
Coord C2 exon
chrX:70470282-70470576
Length
67 bp
Sequences
Splice sites
3' ss Seq
CCCATCTTTCCGAGGTACAGAAG
3' ss Score
-3.42
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GAGATGGCCTGACTGCGAAGGCGAGTGAGAAGCCGCCTGAACGG
Seq A exon
AAGAGAAGCGAGCGCGTTAGGAGAGCAGAACCTCCAAAACCTGAGGTTGTAGATTCCACTGAGAGCA
Seq C2 exon
TTCCAGTGTCAGATGAGGATTCTGATGCCATGGTAGATGACCCCAATGATGAGGACTTTGTGCCATTCCGGCCCCGGCGCTCTCCTCGCATGTCCCTACGCTCAAGTGTGTCACAAAGGGCCGGGCGCTCTGCAGTGGGCACCAAGATGACTTGTGCACATTGCCGGACACCACTGCAGAAGGGGCAGACTGCCTATCAGCGCAAGGGGCTGCCTCAGCTCTTCTGCTCGTCATCCTGCCTCACCACTTTCTCCAAGAAGCCCTCGGGCAAAAAGACCTGTACCTTCTGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=40.4),PF064679=zf-FCS=PU(28.9=13.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGAGAAGCCGCCTGAAC
R:
AAGTCATCTTGGTGCCCACTG
Band lengths:
175-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)