GgaEX0007957 @ galGal3
Exon Skipping
Gene
ENSGALG00000005683 | ARHGAP29
Description
NA
Coordinates
chr8:14338371-14340692:+
Coord C1 exon
chr8:14338371-14338559
Coord A exon
chr8:14338736-14338873
Coord C2 exon
chr8:14340460-14340692
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGCTGATCTTTTAATTTCAGGGT
3' ss Score
8.5
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
TGCTCACTTGCATGCCATAAGAAATGTTTAGAGACATTAGCTATTCAGTGTGGACACAAAAAACTTCATGGAAGGCTTCACTTGTTCGGAGTGGAATTTGCTCAAGCTGCTAAAAGTGTTCCTGATGGCATTCCTTTCATCATCAAGAAGTGTACATCAGAAATTGAAAGCAGAGCACTGAATGTCAAG
Seq A exon
GGTATCTATCGTGTGAATGGAGCCAAATCAAGAGTTGAAAAGCTTTGTCAAGCTTTTGAAAATGGAAAGGATTTGGTTGAGCTCTCAGAACTTTATGCACATGATATTAGCAATGTTCTCAAGCTGTATCTTCGCCAG
Seq C2 exon
CTTCCAGAACCCTTGATTTTATTTCGGCTTTACAATGAGTTCATTGGACTTGCAAAAGAAAGCCAGAGTGTCAATGAAGAATGGGATGCTAAGCAAGCTAGCCCCAAGTCAAAGAAAAGACAATCGATCTGTATTGAACTGAATAGGATCATCATTAAAATTAAAGATCTTCTGAAACAACTGCCTGTACCAAATTATAACACTCTTCAGTACCTTATTGGCCACCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683-'24-26,'24-25,25-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(38.8=30.2),PF0062022=RhoGAP=PU(10.3=28.6)
A:
PF0062022=RhoGAP=FE(25.7=100)
C2:
PF0062022=RhoGAP=FE(44.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGGCTTCACTTGTTCGG
R:
TGTCTTTTCTTTGACTTGGGGCT
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]