RnoEX0011073 @ rn6
Exon Skipping
Gene
ENSRNOG00000012563 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:RGD Symbol;Acc:1306185]
Coordinates
chr2:225604291-225606798:+
Coord C1 exon
chr2:225604291-225604479
Coord A exon
chr2:225604695-225604832
Coord C2 exon
chr2:225606566-225606798
Length
138 bp
Sequences
Splice sites
3' ss Seq
AATTTGTTTCTCCATTCAAGGGA
3' ss Score
7.06
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGTCTCCTTGTTTGTCACCGAAAGTGTTTGGAGAATTTAGTCATTGTTTGTGGTCATCAAAAACTTCAGGGGAAAATGCACATATTTGGAGCAGAATTCATACAAGTTGCAAAAAAGGAACCAGATGGCATCCCTTTCGTGCTAAAAATATGCGCCTCAGAAATTGAAAGTAGAGCCTTGTGTCTCCAG
Seq A exon
GGAATTTATCGTGTTTGTGGAAACAAAATAAAAACTGAAAAACTGTGCCAAGCTTTGGAAAATGGAATGCACTTAGTAGACATTTCAGAATTCAGTTCACATGACATCTGTGATGTCTTGAAATTATACCTGCGACAG
Seq C2 exon
CTTCCAGAACCATTTATTTTATTCAGATTGTACAAGGAATTTATAGACCTTGCAAAAGAGATACAACATGTAAATGAAGAACAAGAGGCAAAAAAAGATAGCCCCGAAGACAAAAAGCACCCACACGTGAGCATAGAAATCAACCGCATCCTTCTGAGGAGCAAGGACCTGCTGCGACAGCTGCCAGCATCAAACTTCAACAGTCTTCATTACCTCATCGTCCATCTGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012563_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(39.6=30.2),PF0062022=RhoGAP=PU(10.3=28.6)
A:
PF0062022=RhoGAP=FE(25.7=100)
C2:
PF0062022=RhoGAP=FE(44.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACCAGATGGCATCCCTT
R:
AGGTCCTTGCTCCTCAGAAGG
Band lengths:
244-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]