MmuEX6073774 @ mm10
Exon Skipping
Gene
ENSMUSG00000039831 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:MGI Symbol;Acc:MGI:2443818]
Coordinates
chr3:122007544-122010058:+
Coord C1 exon
chr3:122007544-122007732
Coord A exon
chr3:122007954-122008091
Coord C2 exon
chr3:122009826-122010058
Length
138 bp
Sequences
Splice sites
3' ss Seq
AATTTGTTTCTCTATTCAAGGGA
3' ss Score
7.65
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGTCTCCTTGTTTGTCATCGGAAGTGTCTGGAGAATTTAGTCATTATTTGTGGTCATCAAAAACTTCAGGGAAAAATGCACATATTTGGAGCAGAATTCATACAAGTTGCAAAAAAGGAACCAGATGGCATCCCTTTTGTACTGAAAATATGTGCCTCAGAAATTGAAAATAGAGCCTTGTGTCTCCAG
Seq A exon
GGAATTTATCGTGTTTGTGGAAACAAAATAAAAACTGAAAAACTGTGCCAAGCTTTGGAAAATGGGATGCACTTAGTAGACATTTCAGAATTCAGTTCACATGACATCTGTGATGTCTTGAAATTATACCTGCGACAG
Seq C2 exon
CTTCCAGAACCATTTATTTTATTCAGATTGTACAAGGAATTTATAGACCTTGCAAAAGAGATACAACATGTAAATGAAGAACAAGAGGCAAAAAAAGATAGCCCTGAAGACAAGAAACACCCACATGTGAGCATAGAAGTCAACCGCATCCTTCTGAAGAGCAAAGACCTGCTGAGACAGCTGCCAGCGTCACATTTCAACAGCCTCCATTACCTCATAGCACATCTGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039831-'43-42,'43-40,45-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.158
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(39.6=30.2),PF0062022=RhoGAP=PU(10.3=28.6)
A:
PF0062022=RhoGAP=FE(25.7=100)
C2:
PF0062022=RhoGAP=PD(29.8=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGAACCAGATGGCATCCC
R:
TTTGCTCTTCAGAAGGATGCGG
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types