HsaEX6032238 @ hg38
Exon Skipping
Gene
ENSG00000137962 | ARHGAP29
Description
Rho GTPase activating protein 29 [Source:HGNC Symbol;Acc:HGNC:30207]
Coordinates
chr1:94179725-94185060:-
Coord C1 exon
chr1:94184872-94185060
Coord A exon
chr1:94184151-94184288
Coord C2 exon
chr1:94179725-94179957
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTTCTATTGAAGGGA
3' ss Score
9.26
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGTCTCCTTGTTTGTCATCGAAAGTGTTTGGAAAATTTAGTCATTATTTGTGGTCATCAGAAACTTCCAGGAAAAATACACTTATTTGGAGCAGAATTCACACAAGTTGCAAAAAAGGAACCAGATGGTATCCCTTTTATACTCAAAATATGTGCCTCAGAGATTGAAAATAGAGCTTTGTGTCTACAG
Seq A exon
GGAATTTATCGTGTGTGTGGAAACAAAATAAAAACTGAAAAATTGTGTCAAGCTTTGGAAAATGGAATGCACTTGGTAGATATTTCAGAATTTAGTTCACATGATATCTGTGACGTCTTGAAATTATACCTTCGGCAG
Seq C2 exon
CTCCCAGAACCATTTATTTTATTTCGATTGTACAAGGAATTTATAGACCTTGCAAAAGAGATCCAACATGTAAATGAAGAACAAGAGACAAAAAAGAATAGTCTTGAAGACAAAAAATGGCCAAATATGTGTATAGAAATAAACCGAATTCTTCTAAAAAGCAAAGACCTTCTAAGACAATTGCCAGCATCAAATTTTAACAGTCTTCATTTCCTTATAGTACATCTAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137962-'45-43,'45-41,47-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(39.6=30.2),PF0062022=RhoGAP=PU(10.3=28.6)
A:
PF0062022=RhoGAP=FE(25.7=100)
C2:
PF0062022=RhoGAP=FE(44.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCCTTGTTTGTCATCGA
R:
TGTTGGATCTCTTTTGCAAGGTCT
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains