DreEX6026066 @ danRer10
Exon Skipping
Gene
ENSDARG00000017748 | arhgap29b
Description
Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
Coordinates
chr2:15520752-15522663:+
Coord C1 exon
chr2:15520752-15520940
Coord A exon
chr2:15521050-15521187
Coord C2 exon
chr2:15522437-15522663
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTAATGTATTTTAAGGGC
3' ss Score
7.54
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
TGCTCCCTGGCCTGTCATAAGAAATGTCTGGAGACTCTTGCCATTCAGTGTGGTCATAAGAAGCTCCAGGGCAGACTGCACCTCTTCGGGATTGACTTTGCCCAAGTAGTAAAGAACAGTCCTGACGGCATCCCTTTCATCATCAAAAAATGCACCTCAGAAATCGAGAGTCGTGCCCTGACCATTAAG
Seq A exon
GGCATTTATCGGGTGAATGGGGCGAAGTCTCGTGTGGAAAAGCTGTGCCAGGCCTTTGAGAATGGAAAGGACTTAGTGGAGCTTTCTGACCTCCACCCGCATGACATAAGCAACGTGCTGAAGCTTTACCTGAGACAG
Seq C2 exon
TTGCCAGAGCCGTTGATTCTGTATCGTTATTATAACGATGTCATTGGGCTGGCGAAAGAAACTCAGAACATGGACAAGACAGACTCAGCTAAAGAGAAATCAGCAGGAGAGCAGCTGGGCCTCAGCACTGAGCTGAAAAGAGTGCTCTTCAAAGTCAGAGATCTCCTTCGACAGCTTCCTGCGCCCCACTACAAAACCCTGCAGTTCCTCGTCACACATCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017748-'23-20,'23-19,24-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.197
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(38.0=30.2),PF0062022=RhoGAP=PU(10.4=28.6)
A:
PF0062022=RhoGAP=FE(26.0=100)
C2:
PF0062022=RhoGAP=FE(43.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATCGAGAGTCGTGCCCTG
R:
ACGAGGAACTGCAGGGTTTTG
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]