GgaEX0008321 @ galGal4
Exon Skipping
Gene
ENSGALG00000005892 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr5:8942492-8945593:+
Coord C1 exon
chr5:8942492-8942608
Coord A exon
chr5:8944919-8945041
Coord C2 exon
chr5:8945477-8945593
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATATTACCTTTCCTCTACAGACA
3' ss Score
9.58
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
ACATTGACGAATGCTCTTTTGAACGGACGTGCGACCACACGTGCATCAATCATCCAGGCACATTTGAGTGTACGTGTAACAAAGGATATGCTCTCTATGGCTTCACACACTGTGGAG
Seq A exon
ACATTAATGAATGTAGCATCAACAACGGTGGCTGCCAACAGCTGTGTGTGAACACACCGGGAGACTATGAATGCCTGTGCCATTCTAACTACAAATTACACTGGAATAAAAAGGATTGTGTTG
Seq C2 exon
AGATAAAGGAGTCCTTTCCTGATAATATGTCACCCAAGGTATTGCTGCACTGCATGAAGAGTGGCAGGAGTGATAGATGCTTCTTAAGCTGCTCTTCAGATGTCCGGGTAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892-'12-12,'12-11,13-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGACGAATGCTCTTTTGAACG
R:
CAGAAACTACCCGGACATCTGA
Band lengths:
234-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]