RnoEX6004268 @ rn6
Exon Skipping
Gene
ENSRNOG00000013123 | Scube2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:RGD Symbol;Acc:1563998]
Coordinates
chr1:174461373-174464522:-
Coord C1 exon
chr1:174464406-174464522
Coord A exon
chr1:174461909-174462031
Coord C2 exon
chr1:174461373-174461489
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGACCATTTTTGTTCCGCAGACA
3' ss Score
9.11
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATGTGGATGAATGTTCTTTGGAAAGGACCTGTGACCACAGCTGCATCAACCACCCTGGTACATTTACGTGTGCCTGCAATAGAGGATACACTCTCTATAGCTTCACCCACTGTGGAG
Seq A exon
ACACCAACGAGTGCAGCGTCAACAACGGAGGCTGCCAGCAAGTTTGCGTCAACACAGTGGGTGGCTATGAGTGCCAGTGTCATCCAGGGTACAAGCTCCACTGGAATAAAAAAGACTGTGTGG
Seq C2 exon
AAGTAAAGGGCGTCCTGCCCACTAGCACGACACCCCGTGTGTCCCTGCACTGTGGTAAAAGTGGTGGAGGAGACAGGTGCTTCCTAAGATGCCATTCTGGCATTCACCTCTCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013123-'11-12,'11-11,12-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGAATGTTCTTTGGAAAGG
R:
CTGACGAGAGGTGAATGCCAG
Band lengths:
234-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]